KEGG   Agromyces sp. FW100M-8: ET445_02280Help
Entry
ET445_02280       CDS       T05835                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
agf  Agromyces sp. FW100M-8
Pathway
agf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:agf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ET445_02280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:agf03400]
    ET445_02280
Enzymes [BR:agf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ET445_02280
DNA repair and recombination proteins [BR:agf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ET445_02280
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: QAY72337
LinkDB All DBs
Position
complement(499994..502459)
Genome map
AA seq 821 aa AA seqDB search
MAAGEGRQTVEVDGRTLALTNLGKVMYPSTGMTKGEVVSYYAEIAPVMLPLVAGRPVTRK
RWVHGVGTADAPGQVFFEKNLAGHAPEWLGRGIIEHSDGPKTYPIADTRAALVWLAQQAA
LEIHVPQWRFAPDGTPGNPDRMVFDFDPGEGVGLAECAEVARLVRDILTPIGLDPIPVTS
GSKGIHLYAPLDGRQSSQQVSDVAHELARALEADHPKLVVSSMKKELRTGKVLIDWSQNS
AAKTTIAPYSLRGRLRPTVAAPRTWDELDDPGLAQFEWQEVLERVAAGNDPAAALGGARP
EASGPLSTYLSMRDPAKTPEPMPAAVPVVPVAQAGAAPADGALRFVVDEHHARSLHFDLR
LERDGVLRSWAVPKGVPDDPGVNRLAVQTEDHPLEYLEFHGEIPKGQYGAGKMSVWDTGT
YTAEKWRDDEIIATLKGREGGPLRGSDGRGVRVALIRTSGEGQKSQWLLHRMKEQRPDAS
AHAPAAAAAEISERPMLAVPGKPVDVARGDWALEWKWDGIRILARTDGGAVRLTSRSGRD
ETARYPELAGLARALRADALVDGELVALDADGRPDFGRMQPRMNVTRPREIAELAASVPV
RLLLFDVLEVAGTPTIDEPYVERRARLERLFRPVEGVPVEVPALAASEAGSETRADPGVV
EAALAEARALGLEGLVAKRRGSRYRPGVRSDDWVKLKLTRTQEVLIGGYRKGTGTREGRI
KSLLVGTPTPDGRLEYAGRVWSGLGEHELDRLLATFDGLHAGDSPFVAVPPAEAADAVWV
RPELVGEIEFSGWTTAGSARHPRWRGLRPDLDAASIVRERD
NT seq 2466 nt NT seq  +upstreamnt  +downstreamnt
atggccgcaggggaggggcgccagaccgtcgaggtcgacggtcgcacgctcgcgctcacg
aacctcggcaaggtcatgtatccgtcgacgggcatgacgaagggcgaggtcgtctcgtac
tacgcagaaatcgccccggtcatgcttcccctcgtcgcggggcgtccggtgacgcgcaag
cggtgggtgcacggcgtcggcacggcggatgccccggggcaggtcttcttcgagaagaac
ctcgcgggccatgcgcccgagtggctgggccgcggaatcatcgagcactccgacgggccg
aagacctatcccatcgcggacacccgcgccgccctcgtgtggctcgcccagcaggccgcg
ctcgagatccacgtgccgcagtggcgcttcgcgcccgacggaaccccgggcaaccccgac
cgcatggtgttcgacttcgaccccggcgagggggtcgggctcgccgagtgcgccgaggtc
gcgcggctcgtgcgcgacatcctgacgcccatcggactcgacccgatcccggtcacgagc
ggcagcaagggcatccacctctacgcacccctcgacgggcgacagagctcgcagcaggtg
tcggatgtcgcgcatgaactggcccgcgcgctcgaggccgaccacccgaagctcgtcgtg
tcgagcatgaagaaggagctccgcacgggcaaggtgctcatcgactggagccagaacagc
gccgcgaagacgacgatcgcgccgtattcgctgcgggggcggttgcggccgacggtcgcg
gcgccgcgcacgtgggacgaattggatgacccggggctcgcgcagttcgagtggcaggag
gtgctcgaacgcgtcgccgcggggaacgatccggctgcggcgctgggcggtgcccgcccc
gaggcatccggcccgctctcgacctacctctcgatgcgcgacccggcgaagacgcccgag
ccgatgccggcggccgtgccggtcgtgccggtcgcgcaggccggcgccgcccccgccgac
ggcgcgctccgcttcgtcgtcgacgagcatcacgcgcgcagcctccacttcgacctgcgg
ctcgagcgcgacggggtgctccgcagctgggcggtgccgaagggcgttccggatgacccg
ggcgtcaaccggctcgcggtgcagaccgaggaccatccgctcgaatacctcgagttccac
ggcgagatcccgaaggggcagtacggcgcggggaagatgtcggtctgggacacgggcacc
tacacggccgagaagtggcgagacgacgagatcatcgcaacgctcaaggggcgcgagggc
gggccgctgcgcggctcggacgggcgcggggtgcgcgtcgcgctcatccgcacgtcgggc
gaggggcagaagtctcagtggctcctgcaccgcatgaaggagcagcggccggatgcctcg
gcgcacgcgcctgcggcggcggccgctgagatctccgaacgccccatgctcgccgtgccg
ggcaaacccgtcgacgtcgcgcgcggcgactgggcgctcgagtggaagtgggacggcatc
cgcatcctcgcccgcaccgacggcggagcggtgcgcctcacgagccgcagcggccgcgac
gagaccgcccgctaccccgaactcgccgggctcgcccgggcgctccgcgccgacgcgctc
gtcgacggcgaactcgtcgccctcgacgccgacggacggcccgacttcgggcgcatgcag
ccgcggatgaacgtcacgcgtccgcgcgagatcgccgaactcgcggcatccgtgcccgtg
cgcctgctgctcttcgacgtgctcgaggtcgcgggcacgccgacgatcgacgagccgtac
gtcgagcggcgggcgcggctcgagcgcctgttccggcccgtcgaaggggtgcccgtcgaa
gtgcccgcgctcgcggcatccgaagccggttccgaaacgcgcgccgacccgggcgtggtc
gaggccgcgctcgccgaagcccgtgcgctcggcctcgaggggctcgtcgcgaagcgacgc
ggctcgcggtaccgcccgggggtgcggagtgacgactgggtgaagctcaagctcacgcgc
acgcaggaggtactgatcggcggctaccgcaagggcaccggcacgcgcgagggccgcatc
aagtcgctcctcgtcggcacgccgacccccgatggccgcctcgagtatgcgggacgggtg
tggtcggggctcggcgagcacgagctcgaccgcctgctcgcgaccttcgacggcctgcac
gcgggcgactccccgttcgtcgccgtgccgcccgccgaggcggccgacgccgtgtgggtg
cgccccgaactcgtcggtgagatcgagttctcgggctggacgacggcggggtcggcaagg
catccgcgctggcgggggctccgccccgacctcgacgccgcctcgatcgtgcgcgagcgg
gactga

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