Agrobacterium tumefaciens H13-3: AGROH133_02830
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Entry
AGROH133_02830 CDS
T01432
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
agr
Agrobacterium tumefaciens H13-3
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_02830 (addB)
Enzymes [BR:
agr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AGROH133_02830 (addB)
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AGROH133_02830 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ADY63021
LinkDB
All DBs
Position
circular:complement(23641..26826)
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AA seq
1061 aa
AA seq
DB search
MTFTHHAKRVLTIAAGTPFLKTLAETLCDGTLTAGYKYDPADPLSLAKVTIYVPTRRSAR
VLRSEFVDLLGGRSAILPLIRPLGETDDDSGFFEIENPEIMDLAPPISGTGRQIELARLI
LAWRNSLPDAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKEWEALAHLDTGD
HAQWWQLTADFLKIASVFWPARLAELNRTSAGRHRNGILRAEANRLANLPDTGPIVVAGS
TGSIPAAADLIASVASLPQGVVVLPGLDLTMPEEQWEAIAEDPTDPSSRTHSQYGLYMLL
QKLDIMRDDVVQIGVIDSDLEKRAAVFSAALAPAKSTSDWNRWREDKQPGFFDDAFAAAT
LIEAANEREEATAIAVALRLALEAPGAGRPSQAALITPDRGLARRVATELQRFGIEADDS
AGTPLSATPQAGLTQLALEAILRPGDPVPVISLLKHPLSRFGLSLEAFTKASKALELIAL
RGGRVETEIGNLEAVLDAQLAAQRDDRHPPAWRLALPEGSVDAARDLARRIAVSTEPLGS
AFVRRDRSGRSFTDKLPLSDWAERTGRVIEAICADDNNDLATLWSGEAGDKLSGLFGELM
ESGEILDADGPQWADIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEG
LWPGQTANNPFLSRNMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYSRALRQGSTPAVA
SRWLQRLLALGGEDFADQLKKRGETYRHWAALMDASIDQEAAKRPAPKPPADLQPKSYSF
SEVGRLRRDPYSIYARRILKLNPLDGFNRDPNAADRGTLYHAIIERYSREGHIPGTPASL
EAMQRILDESFDAEDLPAHVDVIWRPRFEAVARAFIDWEKERHPSIRRSFFEARAGQEIP
EAGIRLTGIADRIDIKTGGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFREA
GSQTPENLIYVRLRPGTRFFADQVNNEHSNRGGKKAPKSAIELATESIDQLAKFVRSLRD
GENGFASRLVPEEQQSYGGEYDHLARVSEWSTAEPGDGDDD
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgactttcacccatcacgcaaagcgcgtcctgacgatcgctgcgggaacaccgttcctc
aaaacgctcgcggaaacgctgtgtgacgggacactgacagccggctataaatatgaccct
gcggatccgctttcgcttgccaaggtgacgatctatgttccgacccggcgctccgcccgc
gtgctgcgctcagagtttgtcgatcttctgggcggtcgttccgccattttgccactgatc
cggccgctcggcgaaaccgatgacgacagcggcttcttcgagatcgaaaatcctgagatc
atggatctggcgcccccgatttccggcaccggccggcaaatcgagctggcgcgcctcatt
ctggcatggcgcaacagcctgccggacgccatcagggccatccattcggactcaccactt
gtcgcaccagccagccctgccgacgccatatggctggcgcgcgcgcttggcgaagtgatc
gatgcgatggatacggaagaaaaggaatgggaggcgctcgcgcatctcgataccggcgat
cacgcccaatggtggcagctgacggcggatttcctgaaaatcgccagcgtcttctggcct
gcccgtcttgccgaactcaatcgaacttccgcaggccgacatcgcaacggcatcctgagg
gcggaggcgaaccggcttgccaacctgccggacaccggaccgatcgtcgttgcgggctcc
acgggctcaattccggcagcagcagaccttatcgcctctgtcgcctcgctgccccagggc
gtcgtcgtgcttccgggcctcgatcttacgatgccggaggagcaatgggaggctattgcc
gaggaccctactgatccttcaagccgcacccattcgcaatacgggctctacatgctgttg
cagaagctcgacatcatgcgagacgatgtcgttcagatcggcgtcatcgatagcgatctt
gaaaaacgcgcggcggttttttcggcagcacttgctcctgccaaatccaccagtgactgg
aaccgctggcgtgaggacaagcaacccggatttttcgacgatgcttttgcggcagcgacc
ctgatagaagctgccaacgagcgcgaagaggcaaccgcaattgcggtggcgctgcggctg
gcgcttgaagcgccgggcgctggccgcccgtctcaggccgcgctgatcacgcccgatcgc
ggactggccaggcgcgtggcgacggaattgcagcgcttcggtatcgaagccgacgattcc
gccggtacgccgctttccgccacgccgcaggccggactgacgcaactcgcactggaagct
atcctcaggcccggagatccggtgccggtcatttcccttctgaaacatccgctcagccgt
ttcgggctttcgctggaggcttttacaaaagcatcaaaggcgctggaattgatcgcactt
agaggcggccgcgtcgaaaccgaaatcggcaatctggaggcggttctcgatgcgcaactg
gcggcacagcgcgatgaccggcatccgcctgcctggaggctggcactgcccgagggaagc
gtagacgccgcgcgcgatctggcacgccggatcgccgtttcgacagagccgcttggcagc
gcattcgttcgtcgcgaccgctcaggccggtctttcacggacaaattgccgctttccgat
tgggccgagcggacgggccgggtgatcgaagccatctgcgcggatgacaacaacgatctt
gccactctctggtccggcgaggcaggcgacaagctttccggcctgtttggcgaattgatg
gaaagcggcgaaatccttgatgcggatggtccgcaatgggctgatatcttcgcggcactg
gtggctggcgaatcgatcaagccgcgatccatgcgccatccgcgcattttcattttcggt
gcccttgaggcaagactgcaaagcgtcgacactgtcgtgatcggcggtctaaatgaaggg
ctttggccgggccagacggcaaacaacccgtttctgtcccgcaacatgaagacagccatc
ggtctggaaccgccggagcggcgcatcggccagctggcgcacgatttcgagatggcgaac
gggacacggcagattttctacagccgcgcgctcagacagggctcgacacccgcagtcgca
tcgcgctggctgcagcgattgctggcactcggcggcgaggattttgccgaccagctgaag
aagcgcggcgagacctatcgccactgggcggcactgatggatgcgagcatcgaccaggaa
gcagcaaagcgccctgcccccaaaccgccggccgacttgcagccgaagagctattccttc
agcgaagtgggcaggctgcgccgtgacccctattcgatctacgcgcggcgtatcctgaag
ctcaacccgcttgatggcttcaaccgcgatcccaatgccgccgaccgtggcacgctctat
catgcaatcatcgagcgctattcccgcgaggggcatattcccggcacgccggcatcgctc
gaggccatgcagcgtattctggatgaaagtttcgacgcggaagatcttcctgcacatgtc
gatgtcatctggcgcccgcgattcgaggcggtggcacgcgccttcatcgactgggagaaa
gaacgacatccatccatccgccgcagctttttcgaggcgcgtgccggacaggaaatcccc
gaggcaggaataaggctgaccggcatcgccgaccgcatagatatcaagaccggcggtcag
gcggatattatcgactacaaaacggggcttgcgccttcagtcaatcaggcgcgcgcgctg
ctcgacccccagctcgcgctggaagcggcagcactgatgcggggtgccttccgcgaggcg
ggttcgcagacacctgaaaaccttatctatgtgcgcctgcggccgggtacccgttttttt
gccgaccaggttaacaacgaacactccaaccggggtggcaaaaaagcaccgaaatcggca
attgagctggcaaccgaatcaatcgatcagctggccaagttcgtgcgttcgctgcgtgat
ggcgagaacggttttgcctcgcggctggtgccggaggagcagcagtcctacggtggggaa
tacgaccacctcgcccgcgtttcggaatggtcgacggcagaaccgggagacggcgatgat
gattga
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