Agrobacterium sp. 33MFTa1.1: EYD00_08980
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Entry
EYD00_08980 CDS
T05906
Name
(GenBank) DUF4130 domain-containing protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EYD00_08980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_08980
Enzymes [BR:
agt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
EYD00_08980
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EYD00_08980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QBJ13510
LinkDB
All DBs
Position
circular:complement(1767422..1768864)
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AA seq
480 aa
AA seq
DB search
MYGPVLEGRGDFTEWRDAARAALAANIPPEKIDWRLQDDGFGLLDFSGAPLPTEGGAPVP
VPAAFVALAQAVICHSDPGRFALLYRLLWRLKRDRALLQFKSDPDVSDVRLLEKSVRRDY
HKMTAFVRFKELSLPQGQGGRRRFVAWFEPDHFIIERTAPFFQRRFTDMDWLIVSPKGSA
RWDGNLLQTSREAAAKPDLKDETDDLWRTYYANIFNPARLKIKAMTAEMPKKYWKNLPEA
ELIPDLILGAEARVLEMAAKEASQPKPFHHRLQAAASAREEQPPLPDGTLASLAHEARHC
TRCALHCKATQTVFGDGPENAKIMVVGEQPGDHEDLAGKPFVGPAGQLFDRTLREIGVDR
GGLYVTNAVKHFKYETRGKRRIHQRPNAGEVEQCRWWLNQEIALVQPKLIVAMGATALYA
LTGGKEKVSEIRGRPLPMQEGRTLFVTVHPSYLLRLPDEQAKEMEIKKFKQDMLYVRNFE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcccggtgctggaggggcggggggatttcaccgagtggcgcgatgctgcgcgc
gcggcgcttgcggccaatataccgccggagaagatcgactggcggctgcaggatgacggg
tttgggcttctcgacttttccggtgcgccattgccaacggagggcggcgccccggttccc
gtacctgccgcatttgtcgcactggcgcaggccgtcatctgccacagcgatcccggccgt
ttcgcgctgctctacaggctattgtggcggctgaaacgggatcgggccctgctgcagttc
aagtccgatccggatgtttccgatgtgcggctgctcgaaaagtctgtccgtcgcgattat
cacaagatgacggccttcgtgcgtttcaaggagctgtcattgccgcaagggcagggcggg
cgacggcggttcgtggcgtggttcgaaccggaccatttcatcatcgaacgtacggctccg
ttttttcaacgtcgcttcaccgacatggactggttgattgtctcgccgaagggcagcgcc
cgatgggacggaaacctgctgcagacatcacgggaggctgccgccaagcctgatctcaag
gatgaaacggacgatctctggcggacctattacgccaatattttcaacccggcccgcttg
aagatcaaggccatgacagcggagatgccgaagaaatactggaagaatctgccggaagcc
gagctcatccctgacctgattctgggcgcggaggcgcgggtgctggagatggcggcgaag
gaggcgagccaaccgaagccgtttcaccatcgcctccaggcagcggcttccgcacgggaa
gagcagccacctttgccggatggcacgcttgcttcgctggcgcatgaagcgcgccactgc
acacggtgtgccctgcattgcaaggcgacgcagaccgtttttggtgacgggccggaaaac
gcgaagatcatggtcgtcggtgagcagccgggcgatcacgaggatctggccggaaaacct
tttgtcggccccgcaggccagctgttcgacaggacgctcagagagatcggtgtggaccgc
ggcgggctttacgttaccaatgccgtgaaacacttcaaatacgaaacgcgcggcaaacgg
cgcatccaccagcggccgaatgcgggggaagtggagcaatgccgctggtggctcaaccag
gaaatcgcgcttgttcagccgaagctgatcgttgcgatgggtgcaacggcgctatatgcg
ctgaccggcggcaaagaaaaggtctcggagattcgcggccggcccttgccaatgcaagaa
gggcggacgctttttgtcaccgtgcacccatcctacctgcttcgcctccctgatgagcag
gctaaagagatggaaatcaagaaattcaaacaggacatgctttatgtaagaaattttgaa
tag
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