KEGG   Actinoalloteichus hymeniacidonis: TL08_19410Help
Entry
TL08_19410        CDS       T04472                                 

Definition
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ahm  Actinoalloteichus hymeniacidonis
Pathway
ahm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ahm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TL08_19410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ahm03400]
    TL08_19410
Enzymes [BR:ahm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TL08_19410
DNA repair and recombination proteins [BR:ahm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TL08_19410
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AOS64673
UniProt: A0A1D8C0U6
LinkDB All DBs
Position
complement(4605853..4606896)
Genome map
AA seq 347 aa AA seqDB search
MGEDSAVPEASGSSRRDHGEQRRSPIRPMLASGGQPMPQAGPRWSWEFKFDGVRAIAVVE
KSGRTRLISRNGLDVTSHYPELTVVGEVLDGRAAMLDGEIVALDEQGRPSFPLLQRRMHV
AHPKAGLTAEIPVFYYLFDLLSLDGTELTAETYLRRRELLDDLGVEGRSKLVRVPPRQQD
VDPNLLLDVARDNGLEGIIAKLNSSRYRMGERSRDWLKFPLLNTQEVVVGGWKPGSGSRA
DSVGSLILGAYDSPGVGLHYIGHVGTGFTQRMLADLLDRLRPLERLTSPFAAPVPREHAR
HARWVEPRLVGEVVFRTWSPDRRLRHSAWRGLRPDRDAAEIVVPAAQ
NT seq 1044 nt NT seq  +upstreamnt  +downstreamnt
atgggtgaggattcggcggtgcccgaggcttccggtagcagccgccgcgaccacggcgag
cagcgcagatccccgattcggcccatgctcgccagcggcgggcagccgatgccgcaggcg
ggcccgaggtggagctgggagttcaaattcgacggcgtccgcgcgatcgcggtcgtcgag
aaatccggccgcacccggttgatcagccgcaatggcctcgacgtcacctcgcactatccc
gaactcaccgtcgtcggcgaggtgctcgatggccgggcggccatgctcgacggcgagatc
gtcgccctggacgagcagggcaggccgtcgtttccgctgctgcaacggcggatgcacgtc
gcgcacccgaaggccggcctgaccgccgagatcccggtgttctactacctcttcgacctg
ctgagcctggacggcaccgagctgacggccgagacctacctgcggcgccgcgaactactc
gacgatctaggtgtggagggccgatccaagctggtccgggtgccgccgaggcagcaggac
gtcgacccgaacctgctgctggacgtggccagggacaacggcctggaaggcatcatcgcc
aagctgaactcctcgcgataccggatgggggagcgcagccgagactggctgaaattcccg
ctgctcaacacccaggaggtggtggtgggcggctggaaacccggttcgggcagccgagcc
gactcggtgggctccctcatcctcggtgcctacgactcgcccggcgtcggactgcactac
atcggccacgtcggcaccggcttcacccaacggatgctcgccgacctgctggaccgactg
cgcccgctggaacgcctgaccagccccttcgccgccccggtgccccgcgaacacgcccgg
cacgctcgttgggtcgaaccgaggctggtgggcgaggtcgtgttccgcacctggagcccg
gacaggcggctgcggcactcagcgtggcgcgggctgcggccggatcgcgacgccgccgag
atcgtcgtgcccgctgcgcagtag

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