KEGG   Aeromonas hydrophila pc104A: V429_06735
Entry
V429_06735        CDS       T03193                                 

Gene name
ligA
Definition
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ahp  Aeromonas hydrophila pc104A
Pathway
ahp03030  DNA replication
ahp03410  Base excision repair
ahp03420  Nucleotide excision repair
ahp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ahp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    V429_06735 (ligA)
   03410 Base excision repair
    V429_06735 (ligA)
   03420 Nucleotide excision repair
    V429_06735 (ligA)
   03430 Mismatch repair
    V429_06735 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahp03032]
    V429_06735 (ligA)
   03400 DNA repair and recombination proteins [BR:ahp03400]
    V429_06735 (ligA)
Enzymes [BR:ahp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     V429_06735 (ligA)
DNA replication proteins [BR:ahp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     V429_06735 (ligA)
DNA repair and recombination proteins [BR:ahp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     V429_06735 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     V429_06735 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     V429_06735 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      V429_06735 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: AHX68580
LinkDB
Position
1434071..1436077
AA seq 668 aa
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQVFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIALQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIQWPAIEKKEASEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccggacgccgaatacgatcgcctgatgcgc
gagctgatcgcgctggaagccgagcaccccgagctgaagacgccggcctcgccgagcgtg
cgggtgggtggccagccgctgaccgccttcaaacaggtgcgccacgagatccccatgctg
agtctggacaacgtgttcagcagcgaggagctgcaggtcttcgagcagcggatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacgggctggcg
gtgagcctgctctatgtggctggccagctggtgcaggccgccactcggggcgatggcacc
acgggcgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccttgcgt
ggcgagggctggccggcccggctggaagtgcgtggcgaggtgttcatgcccaaggctggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgctgccggcagcctgcgtcagctcgattcacgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggcggcgagcagctcggtggctctcacttcggt
cgcctcaatcagctcaaagagtgggggctgccgctcagccctgaagtgaagctcaaggag
ggggctgccggttgccaggcgttccacgacgacatcctggcgcgccgtggcgagctcccc
tacgagattgacggcgtggtctacaaggtggatgccatcgccctgcaggaggagctcggt
tttgtggcgcgggcaccgcgctgggccaccgcccacaagttcccggcccaggaagagatg
actttgcttgagaacgtcgagttccaggtcggccgtaccggcgccgtgaccccggtggcc
aagctcaaacctgtgtttgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgagcgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcgcagcgcccggcggatgctcgcgcg
attctcttcccgaccgagtgcccggtgtgcggttcggcggtggagcggctggagggagag
gcggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcgcgtcgtgccatggacgtggacggcctcggcgacaagatagtggagcaa
ctggtggacaaggggctggtgaagaccccggccgatctgttcagcctcaatgccattcag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggcggccatcgat
gcagcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgaccgccttgaacctcgccaaccacttcctgactctggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcatgtctac
tacttcctgcgccagcctcacaacatcgaggtgctggaggccctgctggccgccggcatc
cagtggccggccatcgagaagaaagaggcaagcgagcagccttttgccggcaagaccttc
gtgctgaccggcaccctcaccaccttgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctgggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtggcgggggag
gcggcaggctccaagctggtcaaggcccaggagctcggcatcaccgtctggagtgaagaa
gagctgcaacaggcgttgcagggctga

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