KEGG   Arachis ipaensis: 107636274Help
Entry
107636274         CDS       T04301                                 

Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4-like
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
aip  Arachis ipaensis
Pathway
aip03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107636274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aip03400]
    107636274
Enzymes [BR:aip01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107636274
DNA repair and recombination proteins [BR:aip03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107636274
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C PTCB-BRCT RNA_ligase BRCT DNA_ligase_IV T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID: 107636274
NCBI-ProteinID: XP_020976728
LinkDB All DBs
Position
B04
AA seq 1131 aa AA seqDB search
MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERG
SYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGT
ASGGLTIKEVNDXMTQLAASENTLSLSLSYIYIYHCKSLGLGXSCRIIFHSYMVCMNNLV
SSFLKLQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHF
FSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDG
LDSDRQLCYWLDVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSH
CSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYIQ
AGADLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDA
LVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVF
AAPYSLRFPRIDRVRYDKAWYECLDVQCXSELKLVYNSIRGEKKIMSIVPSHLTQTDVSS
IKGDSHIFSNMMFCILQSCXPAVVYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHR
VAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLIPLQPKYFLFLSEVTRKKLQEEIDEF
SDSYYMYIDLGEFKQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVK
GEWEVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDELQRCFTSVDRR
FLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSVIAESTSENGENDTLESHFGGDNVQ
DQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPR
TVRKRAKISEYESDKSDSHDNEPEEQENDTGEASFDIYNRHLEPQEVEQQANVQVAETEE
SSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELANEIENRADPMLFDKIPGLATA
KKVEDTKHCDLKEERPAAAAESSSTNAAEPTITKKKKVSYKDVANDLLKDW
NT seq 3396 nt NT seq  +upstreamnt  +downstreamnt
atggcgacggagcaaaccaagttcagcgttatgtgcagcctcttcaactggacgcagcgt
gccaagtcgccggccaagaagcgcgcaaagttccgcaagttcctcgactcattctgcgcc
gaccgcaacttcttccctgccattcgcctcgtcctccccaacctcgaccgcgagcgcggc
tcctacggcctcaaggagtcagtcctcgccatttccctcatcgacgccctcggcatgtct
cgcgactccgaagacgcccttcgcctcattaattggcgcaagggcggcgccaagaccggc
gccaatgccggcaatttcgccctcgtcgccaccgaggtactgcagcgcaggcaaggtact
gcttcgggtggattgacgataaaggaggtaaatgactaaatgactcagttggctgctagt
gaaaacactctctctctctctctctcatatatatatatatatcattgcaaaagccttggc
cttgggtaatcatgcaggattatattccattcatatatggtttgtatgaacaatcttgta
tcttcttttcttaaattgcaggatattgaagttggaaaagctgtgcgtcctcagctagct
aagagagttgctaatgcagctgaagcatggaagaagcttcatgggaaggaagtggttgtc
gagtgcaaatttgatggtgaccgcattcaaattcacaaaaatggaacagagatacatttc
ttctcgaggaacttccttgatcattcagaatatgcacatgcaatgtcagaaatcatacag
caaaacatcttggtagataggtgcatacttgatggtgaaatgttggtttgggacagttcc
ttgaatcgttttgctgagtttggctcaaatcaggaaatagccaaggcagcaagggatgga
cttgacagtgacagacagttatgctattggctagatgttgcatttgatatcctttatttt
ggagatactagtgtaattcaccaaactttgaaggaacgacatgagattctccgtaaagtt
gtgaggccattgaaggggcgccttgaaattttagtacctaatggtggtcttaatagtcat
tgctcttcaggtgaaccatgttggtcattcattgctcataatgtggatgaagttgagaaa
tttttcaaagaaactatagagaacagagatgagggaatagttgttaaagacctcggttct
aaatgggagcctagtgatcgaagtggaaagtggctaaaattgaagcctgagtacattcaa
gctggcgctgatctggatgtgcttatcataggaggttattatggctctggacgacgtgga
ggggaggttgctcagttcttggtgggccttgctgagcgtccatccccaaatacacatccc
aagcggtttatctccttctgtagagttggtactgggctttctgatgatgagcttgatgcg
ttagtaacaaaactaaaaccttacttccgaaagtatgaatatccgaagaagaggccgcca
agtttctatcaagtaactaatcattcaaaagaaaggcctgatgtgtgggttgatagccct
gagaaatcgattattctgtccataaccagtgatatccgaactatagaatctgaggtattt
gctgcaccgtacagcctgaggtttcctcggattgacagggtgagatatgacaaagcttgg
tacgaatgccttgatgtgcaatgtnngagtgaattgaaacttgtttataattccataagg
ggagaaaagaaaatcatgtccattgttccttctcatttaactcagactgatgtttccagt
atcaagggagactctcatatattttcaaatatgatgttttgtatcctacagtcttgctag
ccagctgtcgtttacttcgttaatgtgcctccatctcattctcttgagagcttgcacaaa
atgattgctgagaatgggggagttttctcgatgaacttaaataactctgtcactcatcgt
gtggcggcagagagcaaggggtttaaatttgaagctgcaaaacgtcatggtgatatcatt
cactacagttggatattagattgctgctcacaaaagaagcttatccccttacagccaaag
tacttcctcttcctatctgaagtaacaaggaagaagttacaagaagaaattgacgagttc
tctgactcttactacatgtatattgatcttggagagttcaaacagctcttaaacactatt
aataggtcagaagatatcagtactattgatcattacagcaaaaaatactgcccaaaggat
gagtggtctgtctttattggatgctccatatatttccacactgcaataccatcagtgaaa
ggggaatgggaagttctattgcaacttgctttgagaagattcaaggttgaagttctcatg
ggcggtggtagagttactgataaacttacttgtgcaacccatttagttgtcttgtcagtt
ccaggatatgatgccgaatttgatgagctacagagatgttttacttcagtggataggagg
tttctccagagcaagaggttgcatataataaaatcccattggtttgaagattgtctggac
aataacaaaagattaccagaagaaagttacagcttgaggccctctgtaatagcagagtca
acatctgaaaatggtgaaaatgacaccttagagtctcactttggtggagacaatgtacaa
gaccagaatgtaccctctgaaaaggaaaatagacagagaagtgcaaaagctgctcatgaa
cacagtttggccacggtgtcccatgagaatgttggcccaaggaagagaggaagacctgca
gggagaggtgttaaaaatgttaagatggctggcaacaaagcccaaagagcacggccacgc
actgtgagaaagcgtgcgaaaataagcgaatatgaatcagacaaaagtgattctcatgac
aatgaaccagaagagcaggagaatgacaccggagaagcaagttttgatatttacaataga
catttggaacctcaggaggtcgagcaacaggccaatgtccaagttgccgaaacagaagaa
agttctgaaccaaacagggcagtgcatgatttgaggaatagtagtgagagtgaaagaatg
tatgttccagaaataaaaatggcagataggaccaatgaccaaaacagtgaattggctaat
gagattgaaaatcgggctgatcccatgttatttgacaagattcccggccttgctaccgcc
aagaaagttgaggacactaagcattgtgatctaaaagaagagaggccagctgcagcagca
gaaagcagtagcaccaatgctgctgaacctacaatcactaagaaaaagaaagttagctac
aaggacgttgccaatgacctgctcaaagattggtag

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