KEGG   Amycolatopsis japonica: AJAP_07090Help
Entry
AJAP_07090        CDS       T03225                                 

Definition
(GenBank) Hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aja  Amycolatopsis japonica
Pathway
aja03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AJAP_07090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aja03400]
    AJAP_07090
Enzymes [BR:aja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AJAP_07090
DNA repair and recombination proteins [BR:aja03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AJAP_07090
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AIG74335
UniProt: A0A075UVS2
LinkDB All DBs
Position
1424587..1425888
Genome map
AA seq 433 aa AA seqDB search
MGGLLLGAHDPDSGDLVYIGDVGTGFTEAERARLQARLDVLERKRHPFAETPPRADTARA
QWVEPELVGEVVFRQFTRGAGRLRHTAWRGLRDDKKPADVLAPQRREPASARKTTREHAQ
GEPVAEERPTASPGAKVTVQAGDRRLVLSNLDKPLYPDGFTKGEVINYYSRIVPVLLPHL
AGRPVTFIRFPDGVGGEQFFEKNVPHSAPSWLPTVRIARSGSRGSTEPITYALLDELAAV
VWAANMAALELHVPQWTVDSDGTRRPPDRLVFDLDPGPGTSIVHCCRVAERLHDALTDDG
LTAWAKTSGSKGMQLYCAITTDAPAAPSAYAKKLAQRLARETPDRVTAVMAKAQRTGRVF
IDWSQNNPAKTTVAPYSLRGRDHPTVSTPITWDEVRACRRPAQLVFTADDVLDRVDEHGD
LLGNLDATRAALP
NT seq 1302 nt NT seq  +upstreamnt  +downstreamnt
atgggcgggctcctgctcggtgcccacgacccggatagcggcgacctggtctacatcggt
gacgtcggcaccggcttcaccgaagccgaacgagcccgcttgcaggcccggctcgacgtc
ctcgagcggaagcggcatcccttcgccgagacaccacccagggccgacaccgcgagggcg
cagtgggtggagccggagttggtgggcgaggtggtgttccggcagttcacccgcggcgcc
ggccgcctgcggcacaccgcgtggcgcggactgcgcgacgacaagaagcccgccgacgtc
ctggccccgcaacgacgcgagcccgcctctgcccgaaagaccacgcgtgagcatgcgcaa
ggtgaaccggtggccgaggaacggcccacggcttcaccgggggcgaaggtcaccgtccaa
gccggtgaccggagactcgttctgtccaatttggacaaacccttgtatccggacggattc
accaaaggcgaggtgatcaactactactcgcgtatcgtcccggtgctgctgccgcatctg
gccgggcgtccggtgacgttcatccgcttcccggacggtgtcggcggtgaacagttcttc
gagaagaacgtcccgcacagcgcgccgtcgtggctgccgaccgtccggatcgcccgcagc
ggcagccggggctcgacagagccgatcacgtacgcgttactggacgaactcgccgccgtg
gtgtgggcggcgaacatggccgcgctcgaactccatgttccacaatggaccgtcgacagc
gacggcacgcgccgcccgccggaccggctggtgttcgacctcgaccccgggccgggaacc
tcgatcgtgcactgctgccgcgtcgccgaacgactgcacgacgccctgacagacgacggg
ttgaccgcgtgggcgaagacgtccggctcgaaaggcatgcagctctactgcgccatcacc
accgacgcccctgccgccccgtcggcgtacgcgaagaaactcgcccaacgcctggcccga
gagacaccggaccgggtgaccgcggtgatggccaaagcccagcggaccgggcgggtgttc
atcgactggtcccagaacaaccccgccaagaccaccgtcgccccgtactcgctgcgcggc
cgcgaccaccccaccgtctccaccccgatcacctgggacgaagtccgcgcctgccgccgc
ccagcacagctggtgttcaccgccgacgacgtcctcgaccgcgtcgacgaacacggagac
ctcctcggcaacctcgacgccacacgagcagctctcccgtag

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