KEGG   Amycolatopsis japonica: AJAP_30105Help
Entry
AJAP_30105        CDS       T03225                                 

Definition
(GenBank) Hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aja  Amycolatopsis japonica
Pathway
aja03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AJAP_30105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aja03400]
    AJAP_30105
Enzymes [BR:aja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AJAP_30105
DNA repair and recombination proteins [BR:aja03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AJAP_30105
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase Read-through DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AIG78850
UniProt: A0A075V7J0
LinkDB All DBs
Position
6410195..6411151
Genome map
AA seq 318 aa AA seqDB search
MPDAIAPMLATDGDLPTGGWGYEYKWDGYRCCLRVARDGETRLTSRRGLDITTTYPDVTG
EALDGREAVLDGEIVVLDEQGRPSFPLLQTRHLRTPDASLLERSPVHFFAFDVLFLDGDV
LLDEPYEARREVLTSLGAGGRIAIPPGYTDDDISPDQLLDVVRQHGLEGLIAKKLDSRYY
PGKRTRQWIKRALWHTQEVVVGGWRPGDGRRSGTLGALLLGAHDDAGDLRYIGDVGTGFS
DKVLEDLHARLTPLERKKPPFASEVPRDRARRVHWVKPELVGEVVHRNWTPDGRLRHTTW
RGLRADKTPEDVKLPSSG
NT seq 957 nt NT seq  +upstreamnt  +downstreamnt
gtgccggacgcgatcgccccgatgctggcgaccgacggcgacctgcccaccggcgggtgg
ggatacgaatacaaatgggacggctaccgctgctgcctgcgtgtcgcgcgcgacggcgag
acgcggctgaccagccgccgcgggctcgacatcacgacgacgtacccggacgtcaccggc
gaagcgctcgatggtcgcgaagccgtcctcgacggcgagatcgtcgtgctcgacgagcag
ggcaggcccagcttcccgctgctgcagacccggcacctgcgcacgccggacgcgtcgctg
ctggaacgcagcccggtgcacttcttcgccttcgacgtgctgtttctcgacggcgacgtc
ctgctcgacgagccgtacgaggcccggcgcgaggtgctgacgtccttgggtgccggcggc
cgcatcgccatcccaccggggtacaccgacgacgacatctcacccgatcagctgctcgac
gtcgtccggcagcacgggctcgaaggcttgatcgcgaagaagctcgacagccgctactac
cccggcaagcggacacggcaatggatcaaacgggcgctgtggcacacccaagaggtcgtg
gtcggcggctggcgtcccggcgacggacggcgctcgggaacgctcggcgcgctgctgctc
ggcgcccatgacgacgccggcgacctgcggtacatcggcgacgtcgggaccgggttcagc
gacaaggtcctcgaagacctgcatgcccggctcactccgctggagcggaagaagccgccc
ttcgcctcggaggtcccgcgcgatcgggcgcggcgggtgcactgggtgaagccggaactc
gtcggtgaggtcgtgcaccggaactggacaccggacggccgtctgcggcatacgacgtgg
cggggtttgcgggcggacaagacgcctgaggacgtcaagcttccgtcctctggatga

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