KEGG   Acidovorax sp. JS42: Ajs_1175
Entry
Ajs_1175          CDS       T00455                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs02024  Quorum sensing
ajs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ajs_1175
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Ajs_1175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ajs03019]
    Ajs_1175
   03036 Chromosome and associated proteins [BR:ajs03036]
    Ajs_1175
Messenger RNA biogenesis [BR:ajs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Ajs_1175
Chromosome and associated proteins [BR:ajs03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Ajs_1175
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABM41407
UniProt: A1W582
LinkDB
Position
1240851..1241102
AA seq 83 aa
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSTAEPAADGDNQ
NT seq 252 nt   +upstreamnt  +downstreamnt
gtgagcaataaaggtcagcttcttcaagaccccttcctgaacgccttgcgtcgggagcat
gtgccggtttcgatctatttggtgaacggcatcaaactgcagggtcaaatcgaatccttc
gatcaatacgtcgtgctgctgcgcaataccgtgacgcagatggtgtacaagcacgctatt
tccacgatcgtgcctggtcgtgccgtcaacttctcgactgcggaacccgccgccgacggg
gacaaccagtaa

DBGET integrated database retrieval system