KEGG   Acidovorax sp. JS42: Ajs_2523Help
Entry
Ajs_2523          CDS       T00455                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Ajs_2523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ajs03400]
    Ajs_2523
Enzymes [BR:ajs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ajs_2523
DNA repair and recombination proteins [BR:ajs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Ajs_2523
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF3511
Motif
Other DBs
NCBI-ProteinID: ABM42683
UniProt: A1W8V8
LinkDB All DBs
Position
complement(2685104..2687617)
Genome map
AA seq 837 aa AA seqDB search
MPRKDPLAVYKQKRNFAVTPEPADGGAQSQALQYVIQKHWASRLHYDLRLELDGTMKSWA
VPKGPSYDPADKRMAVQVEDHPISYNQFEGQIPPRQYGAGRVIIWDRGYWVPQGNPREDY
RKGKLKFEIHGHKLHGHWTLVRMHGRDDDKQPPWLLIKECDGLERAAEEFNVVDEMPDSV
ADQPPVAPPARAFAQRAGPAQIQPTAAAVPWTSAPTAPLPDQLSPQLATLVDGPPADLTQ
WLWELKFDGYRMLARVQRGKARLYTRNGNDWTARMPALAQALAALPLSSAWIDGEVLVLD
AQGVPDFQALQNAFDGRSTDALVFYAFDLPYAHGRDLRQMPLAERRALLRSVLQPASSDR
VRFSEAFEARPADLVASACRLGFEGVIGKRKDSVYASRRSTDWIKLKCSHRQEFVIGGYT
DPQGSRTGIGSLLLGVHDEGGALRYAGNVGTGFSERVLADLARRLGALRTQDSPFAQPRS
IPRKVHWVRPTLVAEVSFAEWTKEGKVRHAVFRGLRDDKPAAAIVHEEPAHLQGAAPSRA
ARVGGLQVTSPARVVDPSTGFTKLDLVRYYATVAPLMLPHLQGRPVSLLRAPQGLEGELF
FQKHLDTGALDGVSALSPDLDPGHPPLLEVATAQGLLSAAQMNTVEFHTWNARKDRIERP
NRITFDLDPGEGVPWAHVQEGAALVRLMLTELGLPSFLKTSGGKGLHVVVPIKRLHGWDA
VKDFSQAVVQHLARTLPQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGV
SVPVAWQELDALTGGAHWTVQTVDRRLKTGNGPWSGYDEAAVSIGPAIKALGEKRHT
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atgccccgcaaagacccgctggcggtgtacaagcaaaagcgcaactttgccgtgacgcca
gagcccgcggacggcggagcgcagtcgcaggcgctgcagtacgtaatccagaagcactgg
gccagccgcctgcactatgacctgcgcctggagctggacggcaccatgaagagctgggcc
gtacccaagggccccagttacgacccggcggacaaacgcatggccgtgcaggtggaagac
cacccgatttcctacaaccaattcgaagggcagatcccgccgcgccaatacggcgcgggg
cgggtcatcatctgggaccgcggctattgggtaccgcagggcaatccgcgcgaagactac
cgcaaggggaagctcaagttcgagatccacggccacaaattgcacggccactggaccctg
gtgcgtatgcatggccgggacgacgataagcagcccccctggctgctgatcaaggagtgc
gacgggctagagcgtgcggccgaggagttcaacgtggtggacgaaatgcccgacagcgtg
gcagaccagccgccggttgcgccaccagcgcgcgcattcgctcagcgggccgggcccgcg
cagattcagcccacggcagcggcggtgccgtggacatccgcgcccacggcaccgctgcct
gaccagctatccccgcaacttgccacgctggtggacggaccgccggccgaccttacgcag
tggctgtgggagctcaagttcgacggctatcgcatgctggcccgggttcagcgcggcaag
gcacggctgtacacccgtaacggcaacgactggaccgccaggatgcccgccctggcgcaa
gcgctggccgccttgccgctgtcctctgcatggatcgacggcgaggtgctggtgctggac
gcccagggtgtccccgacttccaggcgctgcagaatgcgtttgacgggcgatcgaccgac
gcgctggtcttttatgccttcgatttgccttatgcgcacgggcgcgatctgaggcagatg
cccctcgctgaacggcgtgcgctgctgcgcagtgtgctgcaaccagcctcctcagaccgg
gtgcggttcagcgaagcgttcgaagcccggcccgcggacctggtggcctcggcctgccgg
ctgggatttgaaggggtgatcggcaagcgcaaggacagcgtgtatgcctcccgccgcagc
acggactggatcaagctcaagtgcagccatcggcaagagttcgtcatcggcggatacacc
gacccgcagggctcacgcacagggatcggttcactgctgctgggcgtgcatgacgagggc
ggtgccctgcgctatgccggcaacgtgggtacgggtttcagcgagcgcgtcctcgcggac
ctggcccggcggctgggcgctttgcgcacccaggacagcccgtttgcccagccgcgctcc
atcccccgcaaggtgcattgggtgaggcccacgctggtggcggaggtttccttcgccgaa
tggacgaaagaaggcaaggtgcgccacgccgtattccgcgggttgcgtgacgacaagccc
gccgccgccatcgtccacgaggagcctgcgcacctgcagggggctgcgcccagccgcgcc
gcgcgcgtgggagggctgcaggtgacaagtccggcgcgcgtggtggatccctccaccggg
ttcaccaagcttgatctggtgcggtactacgccacggtagcgcccctcatgttgccccac
ctgcaggggcggccggtgtccctgctgcgggcgccgcaaggtctggagggcgagcttttc
tttcaaaagcacctggacacgggggcattggacggggtgagtgcgctgtcacccgacctg
gatcctggccacccgccgctgctggaagtggccacggcgcagggcctgctgtcggccgcg
caaatgaacaccgtggagtttcacacatggaatgctcgcaaggaccggatcgagcggccc
aaccgcatcaccttcgacttggatccgggcgagggcgtgccgtgggcgcacgtgcaagag
ggcgcagcgctcgtgcgcttgatgctcaccgagctgggcctgccatcgttcctcaagacc
agcggcggcaaggggctgcatgtggtggtgcccatcaagcgactgcacggctgggatgcc
gtgaaagacttcagccaagccgtggtgcagcatctggcgcgcaccctgccgcagcgcttc
gtggccaagagcgggccccgcaaccgcgtgggaaagatctttgtggactacctgcgcaat
ggctttggcgccaccacggcctgtgcgtggacggcgcgcgcgcggccgggcatgggcgtg
tccgtgcccgtcgcctggcaggaactggacgcgctcacgggtggcgcccactggacggtg
cagaccgtggaccggcgcttgaagaccggcaatggcccctggtcaggctatgacgaggct
gccgtgtccatcgggccggcgatcaaggcgctcggggaaaaacgccacacatag

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