KEGG   Acidovorax sp. JS42: Ajs_2761Help
Entry
Ajs_2761          CDS       T00455                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs03030  DNA replication
ajs03410  Base excision repair
ajs03420  Nucleotide excision repair
ajs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ajs_2761
   03410 Base excision repair
    Ajs_2761
   03420 Nucleotide excision repair
    Ajs_2761
   03430 Mismatch repair
    Ajs_2761
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ajs03032]
    Ajs_2761
   03400 DNA repair and recombination proteins [BR:ajs03400]
    Ajs_2761
Enzymes [BR:ajs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ajs_2761
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ajs_2761
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ajs_2761
DNA replication proteins [BR:ajs03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ajs_2761
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ajs_2761
DNA repair and recombination proteins [BR:ajs03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ajs_2761
   NER (nucleotide excision repair)
    Other NER factors
     Ajs_2761
   MMR (mismatch exicision repair)
    Other MMR factors
     Ajs_2761
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ABM42902
UniProt: A1W9H7
LinkDB All DBs
Position
2924184..2925164
Genome map
AA seq 326 aa AA seqDB search
MLPATHFALLALRRRAWVLAIAACVGAANAQPAAALESPSSADPAAPSPTLAQHYHPGVV
VADYWVSEKYDGVRALWTGQQLISRQGLPIRAPAWFTAGWPPVPMDGELWAGRGQFAAAQ
AAVAQATPDDARWRALRYMVFDLPRAPGGFGERLPLLRRTVAHLGQPWVQPAAQWRVSSH
TELMGQLHRLEKAGAEGLMLRRDDAPYRGGRSDDLLKLKTFEDAEAVVVGHVPGRGKYAG
QTGALLVALPDGRRLRLGSGLPDAVRRNPPPAGTVVTYRFNGTHASGLPRFARFWRVRAD
APSAANAAAAGGQASLEPGPARNRGK
NT seq 981 nt NT seq  +upstreamnt  +downstreamnt
atgctccctgcaacgcacttcgcactgttggccctccggcgccgggcctgggtgctggcc
atagctgcttgtgtaggagcagcgaacgcgcagccggctgctgccctggagtcgccctcc
tccgcggacccggcggcgccctcgcccacgctggcgcagcattaccacccgggcgtggtg
gtcgcggactattgggtgagcgaaaaatacgacggtgtgcgcgccctctggaccggtcag
caactgatcagccggcagggcctgcccatccgggcgccagcgtggttcaccgccggctgg
ccgccggtaccgatggatggcgaactgtgggccggccgcggccagtttgccgccgcgcag
gcggccgtggcgcaggccacgcccgacgatgcccggtggcgcgcgctgcggtacatggtg
ttcgacctgccgcgcgcgccgggcggtttcggcgagcgcctgcccctgctgcgccgcacc
gtggcccatctgggccagccgtgggtccagcctgccgcgcaatggagggtgtccagccac
acggaactgatggggcagttgcaccggctggagaaggccggcgccgagggactgatgctg
cgccgagacgacgcgccctaccgtggcgggcgcagcgacgatctgctcaagctcaagacc
ttcgaggacgcggaagccgtggtggtagggcacgtgcccggacgcggtaaatacgcgggc
cagaccggcgcgctgctggtggcgctgcccgacggccggcgcctgcgcttgggcagcggc
ctgccggatgcggtgcggcgcaatccaccgccggcgggcaccgtggtgacctaccgcttc
aacggcacccacgcaagcggcttgccgcggtttgcgcgcttctggcgagtgcgcgccgac
gcgccctctgcggccaacgcagccgctgccggcgggcaggccagtctggagcccggccca
gcaagaaacagaggcaaatga

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