Acidovorax sp. JS42: Ajs_3896
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Entry
Ajs_3896 CDS
T00455
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ajs_3896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajs03021
]
Ajs_3896
03400 DNA repair and recombination proteins [BR:
ajs03400
]
Ajs_3896
Enzymes [BR:
ajs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ajs_3896
Transcription machinery [BR:
ajs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ajs_3896
DNA repair and recombination proteins [BR:
ajs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ajs_3896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABM44003
UniProt:
A1WCM8
LinkDB
All DBs
Position
complement(4137896..4142125)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDYDAKRKEYGDEFVAKM
GAEGIKELLEGIDIEIEIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATREKINGKGEGLVFADTGEVQRALDAGEA
ELHAKISVRLTEWTKDKATGEFVPETKLVDTTVGRALLSEILPKGLPFSNLNKALKKKEI
SKLINASFRKCGLKDTVVFADKLLQNGFRLATHAGFSVAIDDMLVPPQKAEILARAEAEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDDVSKVMMDQLKVQKTIDRNGKEVNEESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTSNGSLMRAIVEGGEVIESLRDRILG
RTAAEEVLHPETRAVLAQPGRMLDEDLIEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGIIGFN
ATMRYVTNTKGELVVIARSGEIIIQDEHGRERERHKVPYGATLTVKADQNIKAGTILANW
DPLTRPIITEYAGTVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLV
DADGKEVKIPGTDHSVTIGFQVGALIQVRDGQEVGPGEVLARIPMEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTISFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESTYIAGEQVERSEILNTNEALQAEGKLPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDEAERRA
IADAEAAELASAGTHDAAAEIDGSADTAD
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaagtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaaa
atcttcgggcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggccatatcgacctggccgcaccctgcgcccacatctggttcctgaagtcgctg
ccttcgcgcctgggcctggtgctggacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtcaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggcgacgagttcgtcgccaagatg
ggcgccgagggcatcaaggagctgctggaaggcatcgacatcgagatcgagatcgagaag
ctgcgcggcgacctgacgggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctggaggccttcaagaagtccggcatcaagcccgagtggatgatcctggaagtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgccacg
tcggacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgcctgcgccgcctg
ctggaactgaaggcgcccgagatcatcgcgcgcaacgaaaagcgcatgctgcaggaagcc
gtggacagcctgctggacaacggccgccgcggcaaggcgatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagtcgggtcgcttccgccagaacctg
ctgggcaagcgcgtggactactcgggccgttccgtgatcaccgtgggtccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggccctggagctgttcaagcccttcatcttc
tcgcgcctggaggccatgggcattgccacgaccatcaaggccgccaagaaggaagtggaa
gccggcacgcccgtggtgtgggacatcctggaagaggtcatcaaggaacacccggtgatg
ctcaaccgtgcgcccacgctgcaccgcctgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggccatccagctgcacccgctggtctgcgccgcgttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtcggtggaagcgcagctggaagcccgcacg
ctgatgctggcgtccaacaacgtgctgttcccggcctccggcgagccctccatcgtgccc
tcgcaggacgtggtgctgggcctgtaccacgccacccgcgagaagatcaacggcaagggc
gaaggcctggtgttcgccgacaccggcgaagtccagcgcgcgctggatgcgggcgaggcc
gagctgcacgccaagatcagcgtgcgcctgaccgagtggaccaaggacaaggcgacgggt
gagtttgtgcccgagaccaagctcgtggacaccacggtgggccgtgcgctgctgtcggaa
atcctgcccaagggcctgcccttcagcaacctgaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgcgtcgttccgcaagtgcggcctgaaggacaccgtggtcttcgcc
gacaagctgctgcaaaacggcttccgcctggccacgcacgcgggcttctccgtggcgatc
gacgacatgctggtgccgccgcagaaggccgagatcctggcccgcgccgaagccgaggtg
aaggagatcgagcagcagtacgtctccggtctggtgacggccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgacgtgtccaaggtgatgatggatcagctc
aaggtccagaagaccatcgaccgcaacggcaaggaagtgaacgaggaatcgttcaacgcc
atctacatgatggccgactccggcgcccgcggctcggcggcccagatccgtcagctggcc
ggtatgcgcggcctgatggccaagcccgatggctcgatcatcgagacgcctatcaccgcg
aacttccgcgaaggcctgaacgtgttgcagtacttcatctccacccacggtgcccgtaag
ggcctggcggatacggcgttgaagaccgcgaactcgggctacctgacccgtcgcctggtg
gacgtgacgcaggacctggtggtgaccgaggacgactgcggcacctcgaatggttcgctg
atgcgcgccatcgtcgagggcggtgaagtcatcgagtccctgcgcgaccgtatcctgggc
cgtaccgcggccgaggaagtgctgcaccccgaaacgcgtgccgtgctggcgcagccgggc
cggatgctcgatgaagacctgatcgaagagctcgaagccgcaggcgtggacgaagtgaag
gtgcgtaccgcgctgacctgcgaaacccgctacggcctgtgcgccaagtgctacggccgc
gacctgggccgcggcggcctgatcaacctcggcgaagccgtgggcgtgatcgccgcgcag
tccatcggcgagcccggcacgcagctgaccatgcgtacgttccacatcggtggtgcggca
tcgcgtgcggcggtggcgtccagtgtggaagccaagtccaacggcatcatcggcttcaac
gccacgatgcgctacgtgaccaacaccaagggcgagctggtggtgattgcgcgctcgggt
gaaatcatcatccaggacgagcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgacgctgacggtgaaggccgaccagaacatcaaggccggcaccatcctcgccaactgg
gacccgctgacgcgcccgatcatcaccgagtacgcaggtacggtgaagttcgagaacgtc
gaggaaggcctcacggtggccaagcaggtggacgaggtcacgggcctgtccacgctggtg
gtgatcgaccccaagcgccgcggctctgccaaggtggtgcgtccgcaggtgaagctggtg
gacgccgatggcaaggaagtgaagatccccggtaccgaccactcggtgacgatcggcttc
caggtcggcgcgctgatccaggtgcgcgacggccaggaagtgggccccggcgaagtgctg
gcccgcatcccgatggaaggccagaagacccgcgacattaccggcggtctgccgcgcgtg
gccgagctctttgaagcccgcagccccaaggacaagggcatgctggccgagatgaccggc
acgatctccttcggcaaggaaaccaagggcaaggtgcgcctgcagatcaccgatccggac
ggcaaggtctgggacgagctggtgcccaaggaaaagaacgtgctggtccacgaaggccag
gtggtcaacaagggcgagctgatcgtcgacggcccggccgatccgcaggacatcctgcgc
ctgctgggcatcgaggagctgtcgcgctacatcgttgacgaagtgcaggacgtgtaccgc
ttgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaacccgggcgagtccacctacatcgccggcgagcaggtggagcgt
tccgagatcctcaacaccaacgaggcgctgcaggccgaaggcaagctccctgccacgtac
tccaacgtgctgctgggcatcaccaaggcgtcgctgtccaccgactcgttcatttccgcc
gcgtcgttccaggaaacgacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggcctgaaggagaacgtgatcgtgggccgtctgatccccgccggcacgggc
ttggcttaccaccaggcgcgcaaggccaaggacgccatggacgaggccgagcgccgcgcc
atcgcagatgccgaagccgccgagctggcctctgccggcacccacgacgcagccgccgag
atcgacggcagcgccgacacggctgattaa
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