KEGG   Acinonyx jubatus (cheetah): 106984824Help
Entry
106984824         CDS       T04657                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aju  Acinonyx jubatus (cheetah)
Pathway
aju03030  DNA replication
aju03410  Base excision repair
aju03420  Nucleotide excision repair
aju03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106984824 (LIG1)
   03410 Base excision repair
    106984824 (LIG1)
   03420 Nucleotide excision repair
    106984824 (LIG1)
   03430 Mismatch repair
    106984824 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aju03032]
    106984824 (LIG1)
   03400 DNA repair and recombination proteins [BR:aju03400]
    106984824 (LIG1)
Enzymes [BR:aju01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106984824 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     106984824 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106984824 (LIG1)
DNA replication proteins [BR:aju03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    106984824 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     106984824 (LIG1)
DNA repair and recombination proteins [BR:aju03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106984824 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     106984824 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     106984824 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Motif
Other DBs
NCBI-GeneID: 106984824
NCBI-ProteinID: XP_026893746
LinkDB All DBs
Position
Unknown
AA seq 912 aa AA seqDB search
MQRSIMSFFHPKKEGKVKKPEKETSSRETEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEGSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILQEQSKDEDREAKRKKEEAETATESLTEPELAQKEEAEGDRPTTPA
EHLETSPAEPPTDSTSEPEVAGKQEAREGDQAKPPPRAPKTVSSFFAPRKPATKKEGKEE
GPGAPRKEEAKGPLDPSGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALCPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLE
SVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIAGLAGSASTAKKMDVI
KGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQDFPPAVVDAGKGR
TAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPELCRLSPGVPLKPMLAHP
TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTRKYPDIISRIPK
IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAADIQVQVCLYAFDLIYLNG
ESLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL
DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEES
EELQAICKLGTGFSDEELEDHFQSLQALVLPTPRSYVRADGAVAPDHWLDPSAVWEVKCA
DLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVASLYKKQSQIQNQQ
GADLDSDPEDFY
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaggtgaaaaagccg
gagaaagagacctccagcagagagacagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaatgattctccagtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgagggcagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatcccgaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaagatatcctgcaagaacagagcaag
gatgaggacagagaggcaaagaggaagaaggaagaagcagagaccgcaacagaaagcctc
acagagcctgaattggcccaaaaggaggaggcagaaggggaccggcccacgacgcccgct
gagcacttagagacctccccagccgagcccccaacagacagcacctcagagcctgaggtg
gccggaaagcaggaagcacgggagggggaccaggctaagcctccccccagagctcccaag
acggtcagcagtttcttcgcccctcggaagccggcgaccaagaaagaagggaaagaagag
ggacctggcgcccctagaaaggaggaggccaaaggacccctggacccctctggctacaac
ccggccaagaacaactaccatcccgtcgacgacgcctgctggaagccgggccagaaggtc
ccttacctggctgtggcccggacatttgagaagattgaggaggtttctgctcggctccgg
atggtggagacactgagcaacttgctgcgctccgtggtggccctgtgccccccagacctg
ctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggcctggagctt
ggcgtcggggacggtgtcctcctcaaggcggtggcccaggccacggggcggcagctggag
tccgtcaaggccgaggcggccgagaagggcgacgtggggctggtggccgagaacagccgc
agcacccagagactcatgctgcccccgcccgctctcacggccgccggggtcttcgccaag
ttccgagatatcgccgggctcgccggcagcgcctccacagccaagaagatggacgtcatc
aaaggcctctttgtcgcctgccgtcactcagaagcccgattcatcgccagagccctgagc
ggacggctacgcctcgggctggcagagcagtcggtgctggctgccctcgcccaggctgtg
agcctcacgccccccggccaagatttccccccggctgtcgtggacgctgggaagggccgg
acagcggaggcccggaagacgtggctggaggaacagggcatgatcctgaagcagacgttc
tgcgaggtgcccgacctggaccggatcatccccgtgctgctggagcacggcctggagcac
ctcccggagctctgcaggctgagcccaggggtccccctgaaaccgatgctggcacacccc
acccgcggtgtcagcgaggtcctgaaacgctttgaggaggcggctttcacctgcgagtac
aaatacgacgggcagagggcacagatccatgtcctggaaggcggggaggtaaagatcttc
agcaggaatcaggaagacaataccagaaagtacccggacatcatcagccgcatccccaag
attaaactgccatcagtcacatccttcatcctggacacggaagccgtggcttgggaccgg
gaaaagaagcagatccagccgttccaagtgctcaccacccgcaaacgcaaggaggtggac
gcagcagacatccaggtccaggtttgtctatatgccttcgacctcatctacctcaatgga
gagtccctggtacgcgagcccctttcccggcgccgacagctgctccgggagaacttcgtg
cagacggagggcgagttcgtcttcgccacctctctggacaccaaggacacagaccagatc
gctgagttcttggagcagtccgtgaaagactcctgcgaggggctgatggtaaagaccctg
gacgtcgacgccacctacgagatcgccaagagatcacacaactggctcaagctgaagaag
gactacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcctacctgggc
cgtgggaagcgggccggccgctacgggggtttcctgctggcggcctacgacgaggagagc
gaggagctccaggccatatgcaagcttggaactggcttcagtgatgaggagctagaggac
catttccagagcctccaggccctggtgctgcccaccccacgctcctacgtccgggccgat
ggcgccgtggcccccgatcactggctggaccccagcgccgtgtgggaggtgaaatgcgcc
gatctgtccttgtcccccatctaccccgctgcccggggcctggtggatagcgagaagggg
atctccctccgtttcccccggtttattcgtgtccgcgaagacaagaagccggaggaggct
accaccagtgcccaggtggcctctctgtataagaagcagagtcagattcagaaccagcag
ggcgcggacttagattccgacccggaagatttctactag

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