Altererythrobacter sp. B11: AEB_P2077
Help
Entry
AEB_P2077 CDS
T05671
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alb
Altererythrobacter sp. B11
Pathway
alb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AEB_P2077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alb03400
]
AEB_P2077
Enzymes [BR:
alb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AEB_P2077
DNA repair and recombination proteins [BR:
alb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AEB_P2077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
RecG_dom3_C
AAA_30
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BBC72945
UniProt:
A0A2Z5YXL6
LinkDB
All DBs
Position
complement(2168829..2172311)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPDLSRILTAERPLTLSSVARGAQPLVMADLARSAKGRAVFIAPDEAAMRAVTDAARWFA
PELQVIEFPAWDCLPYDRASPALSVSSRRLSALYQLQSGKAGSQLLVTTVNAVIQRVLTP
FRIRESVRELKPGTRIGHESLAALLQRQGYSRTDTVIDSGEFAVRGSIFDIFPSGLDQGL
RLDFFDDELESLRLFDPNTQRTTSTVDGHLLLPASEALLDEDTIKRFRSRYREAFGAHAT
QDPLYQAVSDGRRLAGMEHWLPLFEDRLATLFDHLSAEDLVVIDSSAVAAGEERLGDVED
YFRQRRETGGQAAGSYRPLETAALYMTREEFGRALDQRPVHRASIFAEPESEKSIDFGFR
SARDFAPERSRGDNVYAAAAAHFREIGKAGRRPLLAAYSNGSRARIASILGEAGAEPKMA
SSWQEALGLSAKGQPVAMVLPLDTGFSNDELELVTEQDLLGDRLVRRRKRKKDSDAFLAE
LSALNRGDLVVHLDHGIGRYLGLEPIQVGKSQHDCVMLEYAGGDKLYIPVENLEVLSRYG
SSEETVPLDRLGGEAWQKRRAKLRERIQAIAGELMRTAAARALRKGVVLEPDEASYAQFV
DRFPWEETDDQDAAIADVLKDLSEGAPMDRLVCGDVGFGKTEVALRAAFVAAMAGYQVAV
IAPTTLLARQHYQGFSERFGGFPLKVGRLSRLVPAKEMKDTREALADGTMDVVVGTHALL
SKSTKFKRLGLVIVDEEQRFGVNHKEKLKQLRTDVHVLTLTATPIPRTLQMAMSGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLRERHRGGQSFIVVPRISDMEPLADWLHENVP
EVKFVTAHGQMAPSEVEERMSAFYEKKYDVLLSTTIVESGLDIPSANTIIIHCADRFGLA
QLYQLRGRVGRSKLRAYAYLTTPKDTALSEVSEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGDAGLERDAGGLSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDAKDKAEIESMAAEMIDRFGPLPAPTANLVRLIEIKHQAIAAN
IAKMDVGARGTLVSFHKDEFPDPAGLIAYVERLDGTAKLRPDMKLVINRAWGDPQSRLNG
LFQLTKGLSGIVKRAEKKAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctctcccgtatcctgaccgccgagcgtccgctcactctctcatcggtggcg
cgcggcgcccagccgctggtgatggccgatctggcccgcagcgcgaagggccgcgcggtg
ttcatcgcgccggacgaagcggcgatgcgcgccgtcaccgatgcggcgcgatggttcgca
ccggaattgcaggtgatcgaattccccgcgtgggactgcttgccctatgaccgggcgagc
cccgcgctgtcggtcagttcgcggcggctgtcggcgctctatcaattgcaatcgggcaag
gcgggcagccagctgctggtgacgacggtgaacgccgtgatccagcgcgtgctcaccccg
ttccgcatccgcgagagcgtgcgcgagctgaagcccggcacgcgcatcgggcacgaaagc
ctcgccgccctgctccagcggcagggctattcgcgcaccgacacggtgatcgacagcggc
gagttcgccgtgcgcggttcgatcttcgacatcttcccctcgggcctcgaccagggcctg
cggctcgatttcttcgatgacgagttggaatcgctgcgcctgttcgatcccaacacccag
cgcaccaccagcaccgtggacggccacctgctgctccccgccagcgaggcgctgctggac
gaggatacgatcaagcgcttccgcagccgctatcgcgaggccttcggcgcccacgccacg
caggatccgctctatcaggcggtcagcgacggccgccggcttgccggcatggagcactgg
ctgccgctgttcgaggatcggctggcgaccctgttcgatcacctctctgccgaggatctg
gtggtgatcgattcctctgccgtcgccgcgggcgaagaacggctgggcgatgtggaggat
tatttccgccagcgccgcgagacgggcgggcaggcggcgggcagctaccgcccgctggaa
accgccgcgctctacatgacgcgcgaggaattcggcagagcgctggaccaacgcccggtc
caccgcgcctcgatcttcgccgagccggagagcgagaagtcgatcgacttcggcttccgc
tccgcccgcgatttcgcaccggagcgttcgcgcggcgacaatgtctatgccgccgccgcg
gcgcatttccgcgagatcggcaaggccggccggcggccgctgctggccgcctattccaac
ggttcgcgcgcgcgcatcgcctcgatcctgggcgaagccggcgccgaaccgaagatggcg
agcagctggcaggaggcgctgggcctttccgccaagggccagcccgtcgccatggtgctg
ccgctcgacaccggcttttccaatgacgagctggagctggtgaccgagcaggatttgctg
ggcgaccggctggtgcggcggcgcaagcgcaagaaggattccgacgcgttcctcgccgaa
ctctccgcgctcaaccgcggtgacctggtggtccatctcgatcacggcatcggccgctat
ctggggctggagccgatccaggtcggcaagagccagcacgattgcgtgatgctggaatat
gccgggggcgacaagctctacatcccggtggaaaatctcgaggttctcagccgctacggc
tcctccgaggaaacggtcccgctcgaccggctgggcggcgaggcatggcagaagcgccgc
gccaagctgcgcgagcggatccaggccatcgccggcgagctgatgcgcaccgccgccgcc
cgcgccctgcgcaagggtgtggtgctggaaccggacgaggccagctatgcccagttcgtc
gaccgcttcccgtgggaagagaccgacgatcaggacgcggcgattgccgacgtgctgaag
gatctgtccgaaggcgcgccgatggaccggctggtgtgcggcgatgtcggcttcggcaag
accgaggtggcgctgcgcgccgccttcgtcgcggccatggccgggtatcaggtggcggtg
atcgcccccaccacgctgctggcgcggcagcattatcagggcttctccgaacgcttcggc
ggcttcccgctcaaggtcggccgcctctcccgcctcgtccccgccaaggagatgaaggac
acgcgcgaggcgctggcggacggcacgatggacgtggtggtcggcacccatgcgctgctc
tccaagagcacgaagttcaagcggctggggctggtgatcgtggacgaggaacagcgtttc
ggcgtcaaccacaaggagaagctgaagcagctgcgcaccgatgtgcatgtgctgacgctc
accgccacgccgatcccgcgcacgctgcagatggcgatgagcggactgcgcgagctgtcc
accatccagaccccgccggtcgatcgcctggccgtgcgcacctatgtgatggaatgggac
gacatggtgatgcgcgaggcgctgctgcgcgaacgccaccgcggcggccagagcttcatc
gtcgtgccgcgcatctccgacatggaaccgctggccgactggctgcacgagaacgtgccg
gaggtgaaattcgtcaccgcccatggccagatggcgccgagcgaagtggaagagcggatg
agcgccttctacgaaaagaaatacgacgtgctgctctccaccaccatcgtggaaagcggg
ctggatattcccagcgccaacacgatcatcatccactgcgcggatcgcttcggccttgcc
cagctgtaccagctgcgcggccgcgtgggccggtcgaagctgcgcgcctatgcctatctg
accacgccaaaggacacggccctgtccgaagtgtcggaaaagcggctgaaggtgctgggc
gatctcgacagcctgggtgccggcttccagcttgccagccacgatctcgatattcgcggc
gcgggcaatctgctgggcgacgaacaatctgggcacatccgcgaggtgggcttcgaactc
taccagtcgatgctggaggacgcgatcctggcggccaaggcgggcgatgccgggctggag
cgcgacgcgggcggcctctccccgcagatcacggtggatgcgccgatcatgatcccggaa
gactatgtgcccgatctcgccgtgcgcatggcgctctaccgccgcctgaacgatgccaag
gacaaggcggagatcgaatccatggcggccgagatgatcgaccgcttcggccccctgccg
gcccccaccgccaatctggtgcggctgatcgagatcaagcaccaggccatcgccgcgaac
atcgccaagatggatgtcggcgcgcgcggcacgctggtgagcttccacaaggacgaattc
cccgatccggcagggctgatcgcctatgtggagcgcctggatggcaccgccaagctgcgg
ccggacatgaagctggtcatcaaccgggcctggggcgatccgcaaagccggctcaatggg
ctgttccagctgaccaaggggctaagcgggatcgtgaagcgcgcggagaagaaggcggcg
tga
DBGET
integrated database retrieval system