Alteromonas sp. Mac1: AV939_04000
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Entry
AV939_04000 CDS
T05687
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03410
Base excision repair
ale03430
Mismatch repair
ale03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AV939_04000
03430 Mismatch repair
AV939_04000
03440 Homologous recombination
AV939_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_04000
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AV939_04000
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AV939_04000
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV939_04000
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
BMFP
PIGA
Motif
Other DBs
NCBI-ProteinID:
AMJ85820
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Position
960999..962720
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AA seq
573 aa
AA seq
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MILPVVRRETGDAPLASALHPVIDRIYRGRNVQDVSELENGLKGLTHFNELKGMAAAASI
LADTIEQDKTLIIVGDFDADGATSIAVCIHSLHMMGFNNVDYLVPNRFDFGYGLSVPIVD
IAKQQGADVIITVDNGIACIEGVTHAKALGIEVIVTDHHLPGDTLPPADAIVNPNQPGCT
FPSKNLAGVGVAFYIMLALKTELQQRNWFTEKHIPAPNLASLLDIVAVGTVADVVVLDKN
NRILVHQGLQRIRAGKCRPGIKALVEVANRDCTHLTSTDLGFVIGPRLNAAGRLDDMSQG
IACLLEDDTMQARMIASELDALNRERREIETGMKAQAEQVLEKMSLTEGDIPAALVVYQA
DFHQGVIGIVAGRLKEKYLKPVIAFAHQDDTTIKGSARSIPGVHIRDVLDEVNTRFPGVI
DKFGGHAMAAGLSLPVANLAAFEKAFINIAKQHVDKLDGNQVLLSDGSLTGQELSLSFAH
LLRQAGPFGQGFESPLFDGEFQVVQQRLVGEKHLKLVLREPSVGEVDAIAFNIDIKAWPN
AMVKQVRIAYRLDVNVFRGQESVQLIIEQLESA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgatattgcctgtagtgcgccgtgaaactggtgacgcccctcttgcttctgctttgcac
cctgttatagaccggatttatcgcggcagaaacgtacaagatgttagcgaattagaaaat
ggccttaagggccttacccactttaatgagctaaagggtatggctgctgcggcgagcatt
ctggctgacaccattgagcaggataagacccttattattgtaggtgacttcgatgccgac
ggcgcgactagtattgcggtgtgtatccactcactgcacatgatgggcttcaacaatgtg
gactatcttgtgccgaatagattcgacttcggctatggtctaagcgtgcctattgtggat
atcgctaagcagcaaggcgccgatgttatcattacggtagataatggcattgcatgtatt
gaaggggtgacgcatgcaaaagcattgggcatagaggttattgttactgatcaccactta
cccggtgatacgcttcctcccgccgatgcgattgtaaatcccaatcaaccaggttgtacc
ttcccctctaaaaacttagctggggtaggtgtggcgttttacattatgttagcgcttaaa
accgaactacagcaacgaaactggtttactgaaaagcatattccagcgcctaatttggca
tcgttactagacattgtggctgtaggcaccgtggccgatgtggtggtattagataaaaac
aaccgaattttggtacaccaaggcttacagcgaattcgagcaggtaaatgcagaccgggt
attaaagccttagttgaagtggctaatcgagactgcactcaccttacctctaccgattta
ggttttgttattggccctcgcttaaatgcagccggcagattagacgatatgtctcaaggc
atagcttgcctgttagaagacgatactatgcaagctcgcatgatagcctcggagctagat
gcactaaaccgcgaacgtcgagaaatagaaactggaatgaaggcgcaagccgaacaagtg
ctagaaaaaatgtccctcactgaaggcgatattcctgccgcattggtagtatatcaagcg
gattttcaccaaggtgtaattggtatcgtggcggggcgcttaaaagaaaagtatttgaaa
ccggttatcgcttttgctcatcaagacgatacgactataaaaggttcggctcgctctatc
ccaggagtgcatattcgtgatgtactcgatgaagtgaatacccgctttccgggcgttatt
gataaatttggtggacatgcgatggcagccgggttgagtttaccggttgctaacttagcc
gcattcgagaaggccttcatcaacattgctaagcagcatgtggataaactagacggcaac
caagtactactgtctgacggcagcttaacgggacaagagttgtctttgtcttttgcccat
ttgctcaggcaagcaggtccctttggtcagggctttgaatcgccactctttgatggtgag
tttcaagtggtgcaacaacgtctggtgggtgaaaaacacttaaagctggtattgcgagaa
ccttcagtgggcgaagtagatgccattgcctttaacattgatattaaagcttggccgaat
gccatggtaaaacaagtgcgtattgcctaccgattagatgtaaatgtatttcgcggccaa
gagtctgtacagcttattatcgaacagctagaaagcgcataa
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