Alteromonas sp. Mac1: AV939_17840
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Entry
AV939_17840 CDS
T05687
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AV939_17840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_17840
Enzymes [BR:
ale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV939_17840
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV939_17840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
Helicase_C
ResIII
PriA_CRR
PriA-like_WH
AAA_30
zinc-ribbons_6
AAA_19
PolC_DP2
Motif
Other DBs
NCBI-ProteinID:
AMJ88269
LinkDB
All DBs
Position
complement(4222420..4224624)
Genome browser
AA seq
734 aa
AA seq
DB search
MVFIQVAVPVPLRQLFTYSHTDTLQPGVRVKVPFGPRQLVGIVVESGIDIDDTSKIKTII
EVVDSVPVIDESLRKMAHWLWQYYHHAPGEVIHAMLPVPLRKGEPATPSPAQYIQVTPEG
ADTDVNSLSRAPKQMACLDAVQTTSLIASEARKTFSPAVVKALLDKALIELVEITPELTA
QAWLDTFDIGEKPVPDKEQGVAIAALNQQHGTFAISLLEGVTGSGKTEVYLQSIEPLLKA
GKQVLILVPEIGLTPQTVSRFEKRFNIPVGVLHSQLTDAARLSVWQRSRAGELGIIIGTR
SAIFTPLKNPGMIIVDEEHDESFKQQDGLRYHARDLAAMRAKEHSIPLLLGSATPALETL
NNALNGRFAHLQLTRRAAGAQSTKQYLLDARDQPIHYGISEGLLTIMRQHVNAGNQILVF
VNRRGYAPALLCHYCGTTAMCKRCDRPYTVHKGQNRLQCHHCGATRSMPKECEACHSHEM
VTAGTGTEQVEEGLMKLFPDAKHVRIDSDTVRGKDKLHQTLDAINRQEHQILVGTQILSK
GHHFPHVTLVVVLDCDGALFSADFRAPEKLAQLVTQLAGRAGRASKPGEMWLQTHNPHHP
LLQDLVNNGYAHFARHALMERKASALPPYISQFVIRAEATESSSAYAFLQQARGVLLNSN
TANANPTGLVPQMTGPFPCLIEKRQGRFRFMLVCSHEKRAPLHNALRLALPYLQGLPQAA
KVRWSVDIDPTDFS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggtattcattcaggtggctgtacctgtgccgcttcgccagctatttacctattctcat
accgacaccttacaaccaggtgtgcgggtgaaagtgcctttcggcccacgtcaattggta
ggcattgtggttgaatccggtatagacatagatgataccagtaaaataaaaaccattatt
gaggtagtagatagcgtgccggttattgatgaatcgctaagaaaaatggcgcactggtta
tggcagtattaccaccatgcgccgggggaagtgatacatgccatgcttcctgtgcccctt
cgaaaaggtgagccagccacgccatcacccgcgcaatatattcaagttacaccagaaggg
gctgatactgatgtcaacagtttaagccgagcacctaagcagatggcctgcttagacgcg
gttcaaaccacatcacttattgctagcgaagcgcgtaaaaccttttcacctgcagtagtg
aaagcgctattagataaagcgcttattgagctagtggaaattacaccggaactcactgcg
caagcttggctagataccttcgacattggcgaaaagcccgtgcctgataaagagcaaggg
gtagcgatagcggcgttaaatcagcaacatggcacctttgcaatcagcttgcttgaaggg
gttacaggtagcggtaaaaccgaagtgtatctgcaatctatcgaacctttgcttaaagcc
ggtaaacaagtgcttattttagtgcctgaaattggtttaacgccgcaaactgtttcacgg
ttcgaaaagcgttttaacattcctgtaggggtattgcattctcaattaacggacgcggcg
cgattgtctgtttggcagcgatcgagagcaggtgagttaggtattattattggtacgcgc
tcagctatttttacgccgcttaaaaacccaggcatgattatcgtagatgaagagcatgat
gagtcgttcaagcaacaagacgggcttaggtatcatgcgcgagacttagcggctatgcgt
gctaaagagcacagcatccctttactactcggcagtgccacgccagcgcttgaaacgttg
aataatgcgttgaatggtcgcttcgcgcatttacagctaacccgccgcgcggcaggggcg
caaagcactaagcagtacttgctagatgcccgagaccagcctattcattacggtatttca
gaaggcttgctgacgattatgcgccagcatgtcaatgctgggaatcagattctggttttt
gtaaatagacgtggttatgccccagctcttttatgtcattactgtggcaccacggcgatg
tgtaagcggtgtgacagaccttataccgtgcataaagggcaaaacagactgcaatgccac
cactgtggtgcaacccgttccatgccaaaagagtgtgaagcgtgccacagccatgaaatg
gtgacggcagggacgggcaccgagcaggtagaggaagggttaatgaagctcttccccgat
gccaaacacgtgcgaatagatagcgatacggtaagaggaaaagacaagctacatcaaacc
ctagatgccattaaccgtcaagagcaccaaatactggtgggcacgcaaattttatcgaag
gggcatcatttcccacacgttacactggtggtggttttagattgtgatggggcgctattt
agtgctgattttcgggcgccagaaaagctagcgcagctagttacgcagcttgctgggcga
gcagggcgtgccagtaaaccaggagaaatgtggctgcaaacccacaaccctcatcatcct
ttgctacaagatttggtgaacaacggctacgcccattttgctcgccatgcgttgatggaa
cgaaaagcgtcagcattgcctccttatattagccaatttgtgattagagctgaggcaaca
gagagctcatcggcctatgctttcctgcaacaggctaggggtgtacttttaaactcaaat
actgcaaatgcaaaccctacgggtttagtaccgcaaatgacggggccgtttccttgcttg
attgaaaagcgccaggggcgttttcgctttatgctggtgtgcagccatgaaaaacgtgcg
ccgttacataacgctttacgcttagcattgccttatttacaagggctgccacaggccgca
aaggtacgatggtcggtagatatcgaccccaccgatttcagttag
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