Austrofundulus limnaeus (annual killifish): 106517896
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Entry
106517896 CDS
T06063
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
106517896 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alim03036
]
106517896 (chd8)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
106517896 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
HDA2-3
ResIII
MUN
Motif
Other DBs
NCBI-GeneID:
106517896
NCBI-ProteinID:
XP_013864395
UniProt:
A0A2I4B9I7
LinkDB
All DBs
Position
Unknown
AA seq
2620 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDALQDDSYSQGSSDPVEEALKLALGQVVPAVEPESGPDLTVST
SLDVPVAAPSIPDPTPVQIFTQQPMPVATAHTVSVAPAPTMTSVPAPAPLPIPALPPVPT
PIDAVPQMQAQTTIPIASSTCGATSSTVLLSSPLTVSSSPATTATTQQLTQITHQLTPQQ
LAAITQQAGGKIVILKGPQGQAQVLQSLSGATGQTGGKVIRVLSGTPLKPGVSILQGGAV
LNQTSPGQTQVKVGAAGVQRLLQSANGPVKQVLLTSMPQQVQQTQGQPIQVQIPAQAQMA
QGQTTVQVQPQAQAAQIQVQPQTAQIQVQHQGQAAPTHVQGQVQLQPAMQAQTQGGEAKR
ITLVLQQPSQTGSATSVGQAVAAQQQVTQVQQVQTTQGAQQQQAQAPARLVLGQLPGGKL
VLQGSQLAALAQARTAGQAGGQPKVVTIQLQVQQQPNQQGGVKYQLVSGAGGTGSPQVLQ
ISQGQGGQRVAVPIKMLLHPQTSSAASGGAVSMVKVLNSSAASPSNATTTPSQTIRISKA
PGEPASVRRVEILCKQEKANRIVAEAIARAKARGEKNLPRVLNQDELPTPQTLSEFGGTV
TVVSAAKKKSSGGGSKKKSPISGGQIPKTLVGADKKSKVKAPGGTVTLVGGTMMSGAGNK
SKSKTKANTITLVGAKKRKRNASSDHSDGELSPPSPVALEDDMIMKRRSNRVIKRKKYTE
DLDIKITDDEEEQEDVDVTTTAAAVASISGGAAAQLKQEVELMDADGLPSMQFFVENPSE
EDAAIVDKILSLRITRKEVSAGQYINVEEFFVKYKNYSYLHCEWATLAQLEKDKRIHQKI
KRFKTKHAQMRRLFQEDEEPFNPDYVEVDRILDVSHSIDKDNGEPVIYYLVKWCSLPYED
ATWELKEDVDEGKVKEFGKIQNRQPRLKRTARPPAVSWKKLEETREYKNGNILREYQLEG
VNWLLFNWYNRQNCILADEMGLGKTIQSITLLSEIYATGIQGPFLIIAPLSTITNWEREF
ATWTHMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELR
EISWRCVIIDEAQRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPAQ
FPSEIEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDIQK
KYYRAILERNFSFLSLGAXSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIIAELREVYD
PLAPDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYE
RIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDL
QAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESNVNGLQ
QFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKAS
FVASENRNDIALDDPEFWEKWAKKADIDMDTINQKNTLVIDTPRIRKQTRQFSTLRGEGG
DLSDLDSDDEYPPANSRHSRSSRRSDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILSHA
RCKRRLSERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSI
PVPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYL
KQEVIGEHADAVLKGAHIRDVDIWMPEMEQQEVPAAWWESDADRSLLAGVFKHGYEMYTT
MRADPCLCFLEKVGRPDDKAIDAEQHTGDAELGDDVDYDKYSEDPEFKPASRHTKDLLDE
PDSMNVDDEVSVEDKMAVVVTESVTSQSGACDWPSSSSLTARLRRLITAYQRSYRQEQLK
IEAEAKGDRRRRRCEQASKLKEIARQERQQRWTRREECDFYRVVSTFGVEKIKKEPGFQE
GPDLEFDWTRFRTFARLDKKTDESLSRYFRSFVAMCRRVCHLRPGRGEDPSDLSQTVAPI
TEERASRTLYRISLLRRLRERVLPHPSLEEHLLLAPRSSELPAWWRLPEHDHQLMLGASL
HGVSRTELSIFSDPQFSFSVAREQFIQSQQALPPPPPPPPPPPLVTFSQPKPEMDLPRMK
EDERDESVHLFRDAISAELQSTPLSHQGVKVQGPSWSFKGSKDRGDKTEGGRKGEGGSDS
DSDSDSGSSSSERSGSSDDSGDSDEEGQGAMKVRDVDEENSLLSMTLSQDSIPPPDPIRL
DWPKDRVLINRLDSLCTLVLTGQWPSGRRYVPEAQLNPSSELGGDEMAYTRVIRKPSSTP
VGLGAEGENGEFTVKLLKEEGLKLTFSKQALMPNGSGGESSSRKKRKDQELSDLDGVDAL
ERTPRRRDPPTWLKENPDYEVEGDMLELLVNRSKRKRRRRADKALTGTEKVKLINMRTGK
KVGAAFCPMLQELREYLEENLDIAVAPEWSETVRNSGLLPESLFHRLLTEHSDMPKKSRR
RHHHHHHHHHHHYHTPEPTPEDPTLDGVEEETLVSDGAYMMDEEDLETSHHFLTSPDFDV
KMEGGDSLSQGDYDSSDQEALLDDVIIAQKDSDSSSSSED
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgaggacacacctctgttcaacctggatgctcta
caggatgattcctactctcagggctcctcggacccrgtggaggaagcactgaagttggct
ttgggtcaggtggttccagctgttgagccygaatccgggccagacctcactgtcagtaca
agcctcgatgttcccgtagcggctccttctatcccagacccgacccctgttcagattttc
acgcagcagccaatgccagtggcgactgctcayactgtttctgtagctcctgctcccact
atgacctcagtccctgctccagctcctcttcccatccctgccctaccccctgttcctacc
ccaattgatgctgtgccgcagatgcaggctcagaccaccatccccattgccagcagcacc
tgcggagccaccagtagcactgtactgctgagctcacctttgactgtttctagctctcca
gctaccactgccactacacagcagctcacacagataactcaccagctcaccccgcaacaa
ttagctgccatcacacagcaggctggcggtaaaattgtcattctcaaaggtccccagggt
caagcccaggtcctgcagtctctatcaggagccacaggtcagacaggtggaaaggtcatc
cgtgtgttgtctggcacacccctcaaacctggtgtgtccatactgcagggaggggcagtc
ttgaaccagacgagcccaggacaaacccaggtcaaggtgggtgctgcaggcgtgcagaga
ctgctgcagtctgccaacgggccggtcaaacaggtgctgctcacatccatgcctcagcag
gtacagcaaacgcaaggtcaacccattcaagttcagatcccagcccaagcgcagatggct
caaggtcaaactactgtccaagttcagccccaggcccaggccgctcagatccaggttcag
ccccagacagcccagatccaggtccaacaccaaggccaggcagcgccgacccacgtccag
ggtcaggtgcagctccagccagccatgcaagctcagacacagggcggtgaagcaaagcgc
atcaccctggttcttcagcagccttctcagactggctctgccacgtcagtgggtcaggct
gttgcagctcagcagcaagtcacccaggtccaacaagttcagacgacacaaggggctcaa
cagcagcaagcacaggcccctgctagactggtgctgggtcagctccctggtggcaaactg
gttctccagggaagccagctggcggccctggcccaggctcggacggcaggccaggccgga
gggcagcccaaagtagtcacaatccagctgcaagtgcaacagcagcccaaccaacaagga
ggagttaagtaccagctggtgtcaggggctgggggcactggtagcccacaggtgttgcag
atatcccaaggccaaggaggacaaagggtggcagtaccgatcaaaatgcttcttcaycca
cagacaagttcagccgcatctggtggtgctgtttctatggtgaaggtcctcaacagttca
gcagcaagcccctctaacgcaaccaccactccatcccagaccattcgcatctccaaagct
cccggcgagcctgcgtcggtgcgacgagtggagattctgtgcaagcaggaaaaagcaaat
cgcatagtggctgaagccattgcacgggccaaagcacgtggcgagaagaacctgcctaga
gtcctgaaccaggatgagcttccgaccccacagaccttgtcagagtttggaggaactgtg
actgtagtgtccgctgcaaagaaaaaaagcagcggtgggggaagcaaaaagaaaagtccg
atatctggaggacagatccccaaaaccttagtgggagctgacaaaaagagcaaagtgaag
gcacccggaggaacagttacattagttggagggaccatgatgtctggagctgggaacaag
agcaaaagcaagactaaagccaacactattactctagtgggagcaaaaaaaagaaagaga
aatgcatcttcagaccactctgatggcgagctgagcccaccttcacctgttgcattggag
gatgacatgattatgaagaggcgctctaatcgtgtgataaagagaaagaagtacacagaa
gacctggatatcaaaataacagacgacgaagaagagcaggaagatgtggatgttactaca
acggcagcagctgtggcctccatcagtggaggggcagcagcgcagcttaaacaggaagtg
gagctgatggatgctgatggactgcctagtatgcagttctttgtggaaaatccaagtgag
gaagatgctgctattgtagacaaaatcttgtctctgaggataacgaggaaggaggtgtct
gcaggccagtatattaacgttgaggaattctttgtaaaatacaaaaactactcatacctg
cactgtgagtgggccactttggcacagctggagaaagataaaaggatccatcagaagatc
aagaggttcaagaccaagcatgctcagatgagacgcttgtttcaggaggatgaggagcct
tttaacccagactatgttgaagtggataggatcctggatgtgtcccacagtatagacaag
gacaacggcgagcccgtcatctactacctggtgaagtggtgctccctgccgtatgaagat
gctacttgggaactgaaagaggatgttgatgagggcaaagtgaaggaattcggcaaaatc
cagaataggcaacctcgtctgaagagaacagcacgacctcctgctgtttcatggaagaag
ttggaagaaactcgagagtacaagaatggcaacatacttcgagaatatcagctggaagga
gtcaactggcttctcttcaactggtacaacaggcagaactgtattctggcagatgagatg
ggtctggggaaaaccatccagtccatcactctgctctcagagatatatgctactggtatc
caaggccccttcctcattattgctccgctctctaccatcaccaactgggagagggagttt
gccacttggactcacatgaatgccattgtctaccacggcagccttgccagccgacagatg
atccagcagtatgaaatgtactgcaaagatgacaagggacatttgatcccaggtgcttac
aaatttgatgcacttatcacaacgtttgagatgattctgtccgactgtcctgaactgagg
gagatctcctggcgttgtgtgatcattgatgaagctcarcgccttaaaaatcgaaactgc
aagctgttggacagcttgaagatgcttgatttggaacacaaagtgctgttgaccggcact
cctcttcagaacaccgtggaggaacttttcagtctacttcatttcctggagccggctcag
tttccttctgaaattgaatttcttcgagattttggagacctcaaaactgaggagcaggtg
caaaaactgcaggccattttgaaacctatgatgttgcgccgtcttaaagaggatgtggag
aagaacttggcacccaaacaggagaccattattgaggttgagttgactgatatccagaag
aagtactaccgggccattctggagaggaacttcagcttcctaagtttaggggccaytagc
aacagcaatgtccccaatctgctcaacacaatgatggagctccgcaagtgctgcaaccac
ccctacctcataaatggtgcagaagagaagatcatagcagagttgcgagaggtgtacgac
cccctggcccctgactttcatttgcaggctctaattcggtcagccgggaaactggtgcta
cttgataagttgctgcctcgtctcaaggctggtggccacaaagtgctcatcttttcccag
atggttcgctgcttggatattttggaggactacctcatcaacaagagatacctttatgaa
cgaatcgacggcagagttcgtgggaacttgcgacaggctgcaatcgatcgcttctgcaag
cctgactcggatcgttttgtcttcctgctgtgtacacgtgcaggtggtctgggcatcaac
ctgactgctgctgacacttgtgtcatatttgactcggactggaaccctcagaatgacctg
caggcccaagccaggtgtcatcgtatcggccagtccaaggccgtaaaagtctacagactc
attaccaggaattcctatgagagggagatgctggataaagcaagtctgaagcttggtctg
gatcgagctgtgctgcaaagcatgagtggcaacaaagaaagcaacgttaatgggctccag
cagttttctaaaaaggagatcgaggatctgttgaggaaaggagcttacgcagccatcatg
gatgagaatgatgaagggagtcgtttctgtgaggaagacattgaccagatccttcagcga
agagccaccaccattactattgagagtgaaggaaaggggtctactttctccaaagccagc
tttgtggcttcagagaaccgtaatgacattgccctcgatgaccctgaattctgggagaag
tgggccaaaaaggcagacatagacatggataccatcaatcagaagaacactcttgtgatt
gacacccccaggattcgcaagcagacacgtcagttttccactttacgtggcgaaggtgga
gacctgtctgatctagacagcgatgacgagtatccacctgccaattccagacactcgcgt
tcctctcgacgctctgaccgtcacagcggagggggttacggccgcaccgactgtttccgg
gtggagaaacacctgcttgtttacggctggggtcgctggagggatatcttgtcccatgcc
agatgtaagaggcgtctgagtgaacgtgacgtggaaaccatttgccgcgttatcctggtc
ttttgtctcttgcattatcgtggagatgaaaacattaagagcttcatctgggagctcatc
acgccaccagagaacggccgtgaacctcaaacactactaaaccactctggtctttcaatc
cctgttccaagaggtaggaagggtaagagggtaaaagcccagagtacttttgatgtacag
aaggtcgagtggatacgcaagtacaaccccgacactctgctgcttgatgacagctacaga
aagcaccttaaacatcagtgcaacaaagtgctgctgagggttcgtatgctctactacctg
aaacaggaagttattggtgaacatgcagatgctgtcttaaagggagctcatatcagggat
gttgatatctggatgccagagatggagcagcaggaagtgcctgcagcatggtgggagtct
gatgcagaccgctcgctgcttgctggtgtgttcaaacatggttatgagatgtacactacc
atgcgggctgacccctgcctctgcttcctggagaaagttggtcggcctgatgataaggcc
atcgacgctgagcagcacaccggtgatgccgagctgggagatgatgttgattatgataaa
tactcagaagatccagagttcaagccagcatcaagacacaccaaagatcttttagatgag
cctgattcgatgaatgtggacgatgaggtttctgtagaagacaagatggcagttgtggtc
acagaaagcgtaaccagtcaaagtggagcgtgtgactggccttcaagctcttctctaacg
gcacgattgcggcggctgatcactgcgtaccagcgcagctacaggcaggagcagctgaag
attgaagccgaggccaaaggggaccgcaggcgcaggcggtgcgagcaggccagcaaacta
aaggaaattgcacgacaggagcgacagcaaaggtggacccggagagaagagtgcgatttc
tatcgtgtggtgtcgacgtttggagtggagaagatcaaaaaggagccaggttttcaagag
ggaccagatcttgagtttgactggactcgtttccgtacttttgctcgtctggataagaaa
actgacgagagtctgagtcgatacttccgctcctttgttgccatgtgccgaagggtgtgt
cacctccgcccgggccgcggcgaagatccatcagacctttcccaaactgtggctccaatc
accgaggaacgtgcttcacgtactctttaccgaatcagcctcttgcgtcgccttcgtgag
cgagtcctcccccacccctccctggaggagcacctgctcctggccccgcgcagctctgag
ctgcccgcttggtggagactaccagagcacgatcatcagctgatgctgggagcttcgctg
cacggtgtcagccgcaccgagctctccatcttctcagacccacagttctctttcagcgtg
gcccgggaacagttcatccagagtcagcaggcgctccccccgccgccgccacccccgccg
ccgccaccccttgtgactttcagccagcccaagcctgagatggacttacccagaatgaaa
gaggacgagagagatgagagcgttcatttgttcagggatgcgatcagtgctgagctgcaa
agcacacctttaagtcaccaaggtgtcaaagtgcagggtccgagctggagcttcaagggg
agcaaagacagaggagacaaaacagaaggagggaggaaaggtgagggagggtccgattca
gattctgattctgattcaggatcttcatcctcagagcgatcaggtagcagtgatgatagt
ggagacagtgatgaggagggccaaggagccatgaaggtgagagatgtggatgaagagaat
agtctcctctcaatgactctgtctcaggacagcattcctccacctgatcccatcagactt
gactggccaaaggaccgtgtgctgattaaccgcctggacagtttatgtactcttgtactg
actggtcagtggccctcggggcggcgttacgtacctgaagctcagctcaacccgagctca
gaactggggggagatgaaatggcgtacacgagggtgatccgtaaacccagcagcacacct
gtcggcctcggagcagaaggagaaaatggagaatttactgtaaaactcctcaaggaggag
ggcttgaagctyactttctctaagcaggccctgatgcccaatgggtcaggaggggagagc
agtagccgcaagaagcgaaaagaccaagagctatcagatctagatggagttgatgctctg
gagcgtacccctcgacgacgggaccctcccacatggctgaaagagaacccagattatgaa
gtggagggagacatgttggagctgctggtgaacaggagcaagaggaagaggaggaggagg
gcagataaagccctcacaggtactgagaaggtcaaacttattaacatgaggacaggaaag
aaggttggagctgctttctgtcccatgctgcaggagctgagggaatatctggaggagaat
cttgacatcgctgtggcacccgagtggtccgaaacagttcgcaattctggtttgttgcct
gaatctctcttccaccggctgctgacggagcactcagatatgccgaagaaaagccgtcga
cgacatcatcaccatcaccaccaccatcatcatcactaccacacaccagagcccacccct
gaagaccccaccctggatggagttgaagaggagactctggtgtcagatggagcctacatg
atggatgaggaggacctggagacgtcccatcacttcctcaccagtccggactttgacgtt
aaaatggaggggggcgacagcctgtcccaaggcgactatgacagctcagatcaagaagcg
cttttggacgatgtcatcatagcacagaaggactctgactcttcatcgagctcagaggac
tga
DBGET
integrated database retrieval system
