Austrofundulus limnaeus (annual killifish): 106519578
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Entry
106519578 CDS
T06063
Symbol
col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106519578 (col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106519578 (col11a2)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106519578 (col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106519578
NCBI-ProteinID:
XP_013866753
UniProt:
A0A2I4BGA7
LinkDB
All DBs
Position
Unknown
AA seq
2084 aa
AA seq
DB search
MDIRDCPFRKKRRPWRMDFSSFVLVSVALVLCQTTSARADPVDVLRALQVPSLPEGVKKV
PGFCTSRRSGSPDHAYRITKKAQISAPTKQLFSGRFPENFSIMTLIKPQAGLQAFLLSIY
SEQGIQQLGLELGRSPVFLYEDQNGKPAPEDYPLFKGINLADGKWHRIAFSVSKKNVTLL
LDCKKKMTRPLPRGNNAVVDTNGITVFGARLLDEEVFQGDIQQLLIASNPQAAYDFCEHY
SPDCDSPLPKTQAQDPNTYKKVLNGKAAPTKSTLIKAKPTPAKSAKTGPYKLVVKPPMPT
KXLKSAAKPSKAKPTAAEILLSKIKPTAAAKSKPTTAPAKNGKKPNGAANNNGKTVPEKK
VNGNGKSSAEKKANGNGKATVESKVNGNGSGKTTTEKKANGNGKTTTEVNIKTENKVNGA
AKANGNKEAGNKVKTKTTTKNADSATKSPVGVNKAPKSTKSSKPEPTKITKAAATKAPVA
KAHGKAEFKEMTTTKTVVKKIPLAKPTTKKVPPPTKVAPTHVPVQPTPPRSTKPKVPDTN
VKSKHKPFPPFGKTQLSGTAVPAKRTNGFQQDVDTENSEAGHTPTETDYYYEEMVPQPDG
EVIGQEEVPVQPQVEPALAGEEVDATKAGGVHEEVFTEEYVTGDMGLKEYDYAYKDYSDP
LPETGEIDAYMGPALSAVTDEGGATVSGQKGEKGEPAVLEPGMLIEGPPGPEGPSGPSGP
PGSSGPPGSVGDPGERGPPGRAGLPGADGVPGPPGTSVMLPFRFGQSGGDKGPVVSAQEA
QAAAILSQARMALKGPPGPMGFTGRPGPMGGPGSSGLKGESGDPGPQGPRGQQGVMGPPG
KSGRRGRAGADGARGMPGETGAKGDRGFDGLPGLPGDKGHRGDTGPLGPPGSQGEDGERG
DDGDVGPRGLPGEPGPRGLLGPKGPPGISGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQG
TPGTQGMPGPQGAAGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGTKGNQGPNGPQG
AIGYPGPRGIKGAQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEIGVPGPRGEDGPEG
PKGRVGPPGELGPLGLAGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGSNGEKGTRGVSG
KQGPRGQRGPTGPRGQRGPRGATGKPGAKGTSGSDGPPGPLGERGLPGPQGANGFPGPKG
PPGPPGKDGLPGHPGQRGEVGFQGKMGPPGPPGVVGPQGPSGETGPMGERGHPGPPGPPG
EQGLPGPSGKEGTKGDPGPTGGPGKDGPPGLRGFPGERGLPGTPGGGGLKGSEGPAGPPG
PAGSPGERGTAGTAGPVGPPGRPGPQGPPGPAGEKGVPGEKGPIGPAGRDGVQGPVGLPG
PAGTPGGPGEDGDKGEVGEHGQKGAKGGKGEHGPPGPPGPMGPVGQPGPAGADGELGPRG
QQGPFGAKGDEGTRGFPGAPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNG
ADGPQGGPGGIGNPGPIGEKGEPGEAGPPGIGGEPGKKGPRGERGEKGEAGQPGTAGTAG
GRGRPGDDGPKGNPGPVGFPGDPGPAGEVGPRGQDGAKGERGEDGEPGESGSPGPPGENG
PPGPPGKRGPAGTRGPEGRQGEKGTKGDPGALGPPGKTGPVGPQGQPGKPGTEGLRGLPG
SVGEQGAPGPAGQKGPPGPMGPPGLAGLRGEPGAKGEKGHQGLLGLIGPAGEQGEKGDRG
LPGPHGSTGPKGEPGMVGGTGPIGPAGPPGLPGPQGIKGAKGATGGTGPKGEKGTQGPAG
PPGPPGEVIQPLPIQRSPKSKRSIDASQLLPEFDPDTPASDTAGAEFLTGGEGMEEIFGS
LNSLRQEIETMRFPLGTQDSPARTCQDLHLSQPDLKDGEYWIDPNQGCSRDSFKVLCNFT
NGETCLYPRRGIBTVKMSSWDSETPGSWFSEFSSGSKFSYVDSNGDPVGVVQLGFLRLLS
VQARQNLTYHCHRSVAWADRSAKNNHERALHFRAANDEELSYETNPYIKALTDGCSYRKG
FDRTVLEINSPQVEHLPLLDIKVSDFGESNQQFGFEVGPVCFQG
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgagattgtcccttccggaagaaacggagaccttggcgcatggatttctct
tcctttgtgctggtttccgtggcgctcgtcttgtgccaaacgacttcggctcgtgcagat
ccagtggatgtgctgcgagctctgcaagttccctctctccctgaaggtgtgaagaaagtc
ccaggcttttgcacgtcccgtcgttccggcagccctgatcatgcttaccgtatcaccaag
aaggcccagatctctgcccccaccaagcagctcttctcaggtcgtttcccagagaacttc
tccatcatgaccctgatcaagccccaggctggtctccaagccttcctcctctccatctac
agcgagcagggcatccagcaactgggccttgaactgggtcgctcgcctgtttttctgtac
gaggaccagaacggcaagccagctcctgaggactacccactwttcaaaggcatcaacctg
gctgatggcaagtggcatcgcatcgctttctccgtttccaagaaaaatgtgaccctgctg
ctggactgcaagaagaagatgacccgtcctctgccccgaggcaataacgctgtggttgac
accaacggcattacagtgtttggagctcgtctgcttgatgaggaggttttccagggagac
atccagcagctgttaattgcctccaaccctcaggctgcctacgacttctgtgaacattac
agccctgactgtgactcccctctgcccaagacccaggctcaggaccccaacacatacaag
aaggtacttaatggaaaagcagctcctactaaatccactcttatcaaagctaaacccact
cctgctaaatcagccaagactggaccatacaaactggttgtcaagccacccatgcccacc
aagrctctcaagtctgcagccaagccatccaaagcaaaacccactgcagcagaaatcctt
ttgtctaagatcaaaccaacagcagcggcaaaatccaaacccacaactgctccagctaag
aatggcaagaaaccgaatggtgcagctaacaacaatggcaagactgtacctgaaaagaaa
gttaatggaaatggaaaatcctcagcagagaagaaagccaatggaaatggcaaagccact
gttgagtccaaggtgaatggaaatggcagtggtaaaactacaacagagaaaaaagccaat
ggaaatggcaaaactaccactgaagttaatatcaaaactgagaataaagtcaatggtgca
gctaaagcaaatggcaataaagaggctggaaataaagtmaaaactaaaaccactacaaag
aatgcggatagtgcgactaagtctcctgtaggagttaataaagcacctaaatccaccaag
tcatcaaaaccagaacctacaaaaattacaaaagctgctgccaccaaagctccggtagca
aaagcccatgggaaagccgagttcaaagagatgactacaactaaaactgtggtcaagaaa
attcctctggccaaaccaacaaccaaaaaggttccccctccaacaaaagtagctccgaca
catgtccccgtccagcccactccgcccaggtccacaaaacccaaagtaccagacacaaat
gttaaatccaaacacaaacctttcccaccatttggcaagactcaactcagtggaactgca
gtcccagctaagaggaccaacggttttcaacaggatgtagacactgaaaattctgaggct
ggccacacccctacagagaccgattattactatgaggagatggtcccacagccagatggt
gaggtgattggacaagaagaggtacctgtgcagccccaagtggaaccagccttggcaggg
gaggaggtagatgccaccaaagcaggcggtgtgcacgaagaagtcttcactgaggagtat
gtgactggagacatgggccttaaggagtacgactatgcctacaaggactacagtgacccc
ttaccagagaccggggagatcgatgcctacatggggcccgccttgtccgctgtgacggac
gagggaggcgccactgttagcggtcagaaaggagaaaaaggagaacctgctgttttagag
cctggaatgctgatcgaaggtcctccagggcctgaaggaccttctgggccttccggacct
cctggctcttcaggacctccaggttctgttggtgaccctggagagaggggtcctcctggt
agagctggtcttcctggggctgatggagttcctggacctcctggaacctcagtcatgctg
cccttccgttttggtcagagtggaggcgataagggtcctgttgtttctgcwcaggaagct
caggcagcagccatcttgtctcaggctaggatggctctgaaaggacctcctggaccaatg
ggatttactggacgccctggacccatgggaggtccaggaagttctggtttaaagggagaa
agtggagaccctggtcctcagggccccagaggacaacagggtgtgatgggtcctccagga
aaatcaggaagaagaggtcgtgctggtgctgacggtgccagaggaatgccaggagagact
ggagccaagggtgatcgaggctttgatggtcttcctggtctacctggagacaaaggacac
agaggtgacactggaccactgggcccaccaggatctcaaggagaagacggagaaagggga
gacgatggagacgttggacccagrggtcttccaggtgaacccggaccacgaggtttgctt
gggcctaaaggtcctcctgggatttctggacctcctggtgtacgaggaaatgatggacct
catggtcccaaaggaaacttgggtccccaaggtgagccaggacctcctggtcagcaggga
accccaggaactcagggaatgccaggacctcagggggctgcaggacccccaggagagaaa
ggtcctactggaaaaccaggtttgccagggatgcctggagctgatggtcctcctggtcac
ccaggaaargagggaccttctggcacaaaaggaaaccagggtcctaatggtcctcaggga
gctattggttatcctggccctcgtggcatcaagggagctcaaggaatccgtggtctgaaa
ggtcacaaaggagagaagggagaagatggtttcccaggaattaagggagattttggcgtc
aagggagaaaggggtgagattggagttccagggcccagaggagaggatggtccagaaggg
ccaaagggtcgagttggaccccctggtgagcttggaccacttggacttgctggggagaag
ggtaaacttggtgttcctggacttcctggatatcctggaagacaaggacccaagggatck
ctgggattccctggattccctggttctaatggagagaagggaacaaggggcgtttctgga
aaacaaggaccaagaggacaaagaggaccaacgggccccagaggacagaggggaccaaga
ggagcaactgggaaaccaggagcaaagggaacatcaggaagtgatggccctccaggtcct
cttggagagaggggattaccaggacctcagggagccaatggtttccctggaccaaaggga
cctcctggaccaccaggaaaggatggactgcctggacatcctggacagagaggagaagtt
ggtttccaaggtaaaatgggtccacctgggcctcctggagttgttggaccacagggtcca
tcaggagaaacaggtcctatgggcgagcgtggccaccccggaccccctggtccaccagga
gagcagggacttcctggtccctcrgggaaagagggcacaaagggagatcccggacctaca
ggaggccctgggaaagatggcccccctggtctgagagggttccctggagagagaggactt
cctggaacccctggtggtggaggactgaagggaagtgaaggacctgctggacctcctgga
cctgctggttctcctggtgagaggggaactgcaggaactgctggacctgtgggtcctcct
ggtagaccaggtcctcagggtccacctggaccggctggagagaagggagttcctggtgaa
aaaggccccattggtccagccggtcgagatggggttcarggtccagtgggtctgcctggc
cctgctggaacacctggaggacctggagaggatggagataagggtgaagttggagaacac
ggtcagaaaggcgccaaaggaggaaaaggagaacatggtcctcctggtccacctggtcca
atgggtcctgttggtcagcctggtcctgctggagctgacggggagcttggaccgaggggg
cagcaggggccttttggagccaaaggtgatgaaggaactcgaggattcccaggtgctcca
ggacccatcggacttcagggtctgccgggaccttcaggtgagaaaggagagacaggagat
gttggaccaatgggtcctccaggccctccaggaccccgtggtcctgctggacccaaygga
gctgacggtccacaaggtggtcctggtggtataggtaatcctggaccgattggagaaaag
ggagaacctggtgaagctggaccacctggcatcggaggagaacctggaaagaagggtcct
cgaggagagcgtggagagaagggagaggcgggacaacctggaactgctgggactgcagga
ggacgaggacgacctggagacgacggacccaaaggaaaccctggtcctgttgggttccct
ggagatcctggtcctgctggtgaggtcggacccagaggtcaagatggagcaaagggagag
agaggagaggatggtgaaccaggagagtctggctccccaggacctcctggagagaacggc
ccacctggcccaccaggaaagcgaggtcctgctggaacaagaggaccagagggacgacaa
ggagagaagggaaccaaaggagatccaggtgcactcgggcccccaggaaagaccggcccc
gttggtccacagggtcaaccaggaaaaccaggaacagaaggtctcagaggactcccagga
tcagtgggggagcaaggagctccaggacctgctggacaaaaaggaccacctggacctatg
ggacctcctggtttggccggtctgcgtggagaacctggtgcaaagggtgagaagggacac
caaggtcttctcggtctgattggacctgcaggagaacagggagaaaagggagaccggggt
ctgcctgggcctcatggatccaccggacctaagggagagcctggaatggtgggaggaacc
ggacccatcgggcctgctggtcctccaggtcttcctggtcctcaaggtattaaaggtgca
aagggtgcgactggaggaactggtccaaagggagaaaagggtacacaaggacctgctgga
cctccgggcccaccaggtgaggtcattcagcctctgcccatccagaggagtccsaagtcc
aaacgctccatcgacgccagccagctcctccccgagtttgaccccgacacgcccgcctcc
gacaccgccggcgccgagttcctgacgggcggcgaaggcatggaggagatcttcggctct
ctgaactcgctgcgacaggagatcgagaccatgcgcttccccctgggcactcaggacagc
cccgcccgcacctgccaggacctgcacctgagccagccggaccttaaagacggagagtac
tggatcgacccgaaccagggctgctccagagactccttcaargtcctctgtaacttcact
aacggagagacgtgtctgtaccccagaagaggcatcracacggtaaagatgagctcctgg
gactcagagactccaggatcgtggttcagtgagttctcctctggtagtaagttctcctac
gtggactctaacggtgatcctgtgggcgtggtccagctgggcttcctgcgcctgctgagc
gtccaggcccggcagaacctcacctaccactgccaccgctcggtggcctgggccgaccgc
agcgccaagaacaatcacgagagggcgctgcacttccgagccgctaacgacgaggagctg
agctacgagaccaacccttacatcaaggctttgacggacggctgctcttaccgtaaaggc
ttcgacaggacggtgctggagatcaactcgccacaggtggagcatctgcctctgctggac
atcaaggtgtcagactttggggagagcaaccagcagtttgggtttgaagtgggacctgtg
tgtttccagggctaa
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integrated database retrieval system
