KEGG   Alloactinosynnema sp. L-07: CRK57032Help
Entry
CRK57032          CDS       T04489                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
all  Alloactinosynnema sp. L-07
Pathway
all03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:all00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CRK57032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:all03400]
    CRK57032
Enzymes [BR:all01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CRK57032
DNA repair and recombination proteins [BR:all03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CRK57032
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: CRK57032
UniProt: A0A0H5CH83
LinkDB All DBs
Position
I:complement(2107312..2109291)
Genome map
AA seq 659 aa AA seqDB search
MAPAWIEPMLAKPDGGRLRTGPNWSYEYKLDGYRAAMRIAADGTTALTSRNGIDITHEFA
SLVGVLAPTLDGRAAVLDGEIVVYNDAGQVDFGAMQQRRGRYRSHVSSPRRHEAFLDVAV
RFLAFDLLQLGDQSLLTIPYDERRARLEQLAMPDPSLVSVVPAFTFAALAADRRTPQDLL
NRAAAEGFEGLVAKLRTSTYQPGKRPDSWLKHPLIQTREVIVCGWRPGQSRFTGILGGLL
LGAHNPDTGDLVYIGDVGTGFSEADRSQLQTRLETLERRAHPFAVEPPREDIRRARWVTP
TLVGEVVYRQFTRDGRLRHTAWRGLREDRVPADVTSPQSNLYGPTPAAPAKPAEQVVTSS
ARVAVQVGDRRLTLSNLDKVLYPAAGFTKGEVIRYYSLIAPVLLPHLAGRPVTTIRFPDG
VHADKFFEKNVPRGAPDWLPTVRLPSSGSRGSGDMIDYPLIYELAALVWAANLAALELHV
PQWTVAPGPTRGLPDRLVFDLDPGPGATVIDCARVAERLHEALIDRGLTPVAKTSGSKGM
QVYAAVRVSRAEQTSTYAKDLAERFAAETPDLVTARMTKTLRAGKVFIDWSQNHPAKTTI
APYSLRGRDDPTVSTPVAWPEVRASQHVHDLTFTADDVLDRVERLGDPFAALLDSSYQI
NT seq 1980 nt NT seq  +upstreamnt  +downstreamnt
gtggcgcccgcctggatcgagccgatgctggccaaacccgatggtggcaggctgcgcaca
ggcccgaactggtcctatgagtacaagctggatgggtatcgagcggcgatgcggatcgcc
gcagacggcacgacggcgctaaccagccggaacggcatcgacatcacgcacgagttcgcc
tcgctggtcggggttctcgcgccgacactcgatgggcgagcggcggtgcttgacggggag
atcgtcgtctacaacgacgcgggccaagtcgacttcggcgcgatgcaacagcgccgcggc
cgctaccgatcgcacgtcagttccccgcgccgccacgaggcattcctggatgtggcggtg
cggttcttggcgttcgacctgctgcagttgggcgaccagtcgctgctgaccattccgtat
gacgagcggcgggcgcggctggaacagttggcgatgccggacccgtcgcttgtctcggtg
gtgcctgcgttcaccttcgccgcgctggccgccgatcggcgcaccccgcaagacttgctg
aacagggccgcggccgagggcttcgagggcctggtcgccaaactccggacgtctacctac
cagccggggaagcggccagactcgtggttgaagcatccgctgatacagacccgcgaggtg
atcgtctgcggttggcggcccgggcagagccgattcaccggcatcctcggcggcctgctg
ctcggcgcccacaaccccgacactggtgacctcgtctacataggagacgtcggtaccggg
ttctccgaagccgatcggagtcagctgcagacccgtctggagacactggagcggcgggcg
cacccgttcgcggtggagccgccgcgggaggacatccggcgcgcccgctgggtcacacca
acacttgtgggtgaagtggtctaccgacaattcacccgggatggtcgactccgccacacc
gcgtggcgcggattgcgcgaagaccgtgtgccggcggatgtcacctcaccacagtcgaac
ctgtacggcccgaccccagcggccccggcgaagcctgcggagcaggttgtgacatcgagt
gcccgggtggccgtccaggtcggggaccgcaggctcaccttgtccaatctggacaaggtg
ctgtacccggcagccggattcaccaagggcgaggtgatccgctactactccctcatcgca
ccagtcctactcccccacttggcgggcagaccggtcacgaccatccgattccccgacggc
gtgcacgccgacaagttcttcgagaagaacgtcccccgcggtgcgcccgactggctgccc
accgtccgactgcccagcagcggatcccgcggtagcggtgacatgatcgactatccgctg
atctacgaacttgcagcactggtgtgggcggccaatctcgccgcgctggaactccacgtg
ccacagtggaccgtggcccccggcccgacacgaggattgcccgaccggctggtgttcgac
ctcgatcccggaccaggcgcgacagtaatcgactgcgcccgagtcgccgaacggcttcac
gaagccctcatcgaccggggactcacccctgtcgccaagaccagcggctccaaaggcatg
caggtctacgccgccgtgcgcgtctcccgcgccgagcagacgtcgacttacgccaaagac
cttgccgaacggttcgccgcggagacccccgacctggtcacagcgagaatgacgaaaaca
cttcgggcaggcaaggtattcatcgactggagccagaaccaccccgcgaaaaccaccatc
gccccgtactcactacgcggacgcgacgacccgaccgtgtccaccccggtcgcctggccc
gaagtccgcgccagccaacatgtccacgacctcaccttcaccgccgacgacgtcctcgac
cgcgtcgaacggctcggtgacccgtttgcggcactactcgacagctcctaccagatctga

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