KEGG   Alcanivorax sp. NBRC 101098: AS19_11260
Entry
AS19_11260        CDS       T03879                                 
Name
(GenBank) phosphoric diester hydrolase
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
aln  Alcanivorax sp. NBRC 101098
Pathway
aln03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aln00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AS19_11260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aln03019]
    AS19_11260
   03009 Ribosome biogenesis [BR:aln03009]
    AS19_11260
Enzymes [BR:aln01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AS19_11260
Messenger RNA biogenesis [BR:aln03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AS19_11260
Ribosome biogenesis [BR:aln03009]
 Prokaryotic type
  rRNA processing factors
   AS19_11260
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: BAP13977
LinkDB
Position
complement(1232328..1235552)
AA seq 1074 aa
MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE
LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE
AQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALV
SIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDVE
NRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLA
LSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNLDT
PHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPPPK
PVVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGRGG
NNRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNRAADN
RNDGRADTKDDGNRNERRGRNDNRRNNRNNDSRGEGRNDNRNGNRNDNKPDSKVSEGAKP
RTRKQDNAADGADSKSSDKGPKAPRRTDAKDNRPLRERQRPNKANNSDGGVAQPAKAQRT
AAPKPPRNEQPAPVDDEGHPATKLVPAQEPSAQAKRDDTPKKAATDKTAPLNEQSPVTNQ
PQAAAEPKQEQTVAPAKVQQPAAEQPPVTKAPVAQTTAAPKVEDDKPASAQPTASDTTTA
APAQEQPTPTADSTPQQPKADTPKAASTDDKPAPSAPQQAATTNAAPVAAQPATAAPTQT
PAPAKPAEENKSEEKPVTAEPAAPSRASNDPRSPGYKPTPVAPAPKVEEKPKPAPASNEL
PSRATEVKAVKAEAKPAAAEQGRASNDPRQRRREQLAAQEATAKAQQTESPSDD
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgaaacgtatgcttattaacgccactcaccctgaagaagtacgggtggcactggtcgac
ggacaacgtctgtatgacctggatatcgaacaccgcacgcgggaacaaaaaaaagccaac
atttataaaggcaagatcacccgggtagaaccgtccctggaagccgcctttgtggatttt
ggcgcagagcgccatggctttcttcccctcaaagaaatttcccgccagtacttccaaaaa
gatcccaaggacatccagggccgcattaacatcaaggaagtcatcaaggaaggccaagaa
gttattgtccaggtggccaaagaagagcggggcaacaaaggcgccgccctcaccaccttt
attagcttggcgggtcgctatttggtgctaatgcccaataatcctcgcgccggcggcatt
tcccgccgtatcgaaggggaagagcgggctcagctgaaagaagccctaggcgccctgaac
atccccgacgaaatgggggttatcgtgcgcaccgctgggctgggccgcagtgctgaggaa
ttacagtgggacctgaactacctactgaaactgtggacctccatcgacgatgcctcacag
gatcgcaaggcacctttcctgatctatcaggaatccaacgttatcatccgcgccattcgt
gactacttgcgcaaagatatcggcgaagtcctgatcgattccaagaaagtttatgatgaa
gcccaaggtttcgttcagcaggtaatgcaggacttccagcacaaaatcaaactgtacgac
gacgaaaccccactgttctcccgtttccagattgagtctcaaatcgaaaccgcctttgag
cgggaagtgaagttaccctccggtggctcaatcgtgatcgacccgacagaggccttggtg
tccatcgacatcaactcctcccgcgccaccaaaggcgcagacatcgaagagaccgctctg
cagaccaacctggaagcggcggaagaaattgcccgccagctgcgcctgcgtgatatcggc
ggcctgatcgtggtggatttcatcgacatgggcccggcacgcaaccagcgcgacgtggaa
aatcgcatgcgcgatgccctggaagcagaccgtgcccgcatccagttaggccgcatctcc
cggtttggtttattggagctgtcccgtcagcgcctgcgcccgagcctgggtgaaacgtcc
agtatcgtttgtccgcgttgtgatggccaaggccacatccgtgatgtgaagtccctggcg
ctgagcatccttcgtcttatcgaagaagaagtgatgaaagagcgcaccggcgaaatccaa
gcccaagtaccagtagccgtggccacctacctactcaatgaaaagcgtgatccgctacgc
gccattgagaagaaccacaaagtgcgggtagtcattatccccaaccagaacctggacacg
ccccactttgaagtggaacgcatccgagatgaccaaacgtccacccagctgagccatgag
atggatctgctggaaggcaccaaggatgcagatattgcttccgctcaagacactgaaatt
aaaacccaagagccggccgtcagactaatggcaccggatactgccccgccgccgcccaaa
ccggtcgtcgcggccccgactgcgcaagtgcaaaatctgggattgcttgcccgcctattc
tcttggttggctcaagtgttcaccgccgaacccaaaccagccaaggcgaagaaagacgcc
ccccaacgcaaaagcgacaacaagcctcgccagcaacaaaacaatcgtggccgtggcggc
aacaaccgcaacgacagtaataacagcgataaccgcgctaagaacgataaccgcaacaag
cgtgatggcggcaaagccggtgataacgacaatcgcaacacccgcaacaagcgtcaaaac
gacaaagatagcggtcgcaagaatgataaccgtcaagcggacaatcgcgctgccgacaac
cgcaacgatggccgagccgataccaaggatgacggcaaccgtaacgagcgccgtggtcgc
aatgacaaccgtcgtaacaatcgcaacaacgacagccgtggcgaaggtcgcaatgacaac
cgaaacggtaaccgtaacgacaacaagcctgatagcaaggtaagcgaaggagccaagccg
cgcacccgtaaacaggataacgccgctgatggtgctgacagcaaaagcagcgacaagggc
ccgaaagccccccgccgcaccgatgccaaggacaaccgtcccttgcgcgagcgacagcgc
cccaacaaagctaacaacagcgatggtggcgtagctcaaccggccaaagctcagcgcact
gcggcccctaagccgccacgcaacgaacagccggcacctgtggatgacgaaggtcacccg
gcgaccaagctggtaccggcgcaggaaccttccgcacaagcgaagcgcgacgataccccc
aaaaaggcagcgacagacaagacggcaccgctcaacgagcaatcacccgttaccaaccaa
ccgcaagccgcagctgaaccgaagcaggaacaaaccgttgctccggccaaggtacagcaa
cctgctgctgaacaaccgcccgtcaccaaagccccggttgcgcaaaccaccgccgcacca
aaagtcgaggacgacaaacccgccagcgctcagcccacagccagcgacaccaccaccgct
gctccggcgcaggaacaaccgaccccgaccgccgacagcacgcctcagcagcccaaagct
gatacccccaaagcggccagcactgacgacaagccggcgccctctgcgccacagcaagcg
gcaaccaccaacgccgctccagtagccgctcaaccggcaacagccgcaccgacccaaact
ccagctccggccaagccagctgaagaaaataagtcagaggaaaaaccggtcaccgccgag
ccggcagcaccaagccgtgccagcaatgacccgcgctctccaggctacaaacctacccct
gtcgctccggcgcccaaggtagaagaaaagcccaaaccagcaccggccagcaatgagcta
cccagccgtgccaccgaagtgaaagccgtcaaagcagaagctaagccggccgccgcggaa
cagggccgagccagcaacgacccgcgccaacgccgccgtgagcagctcgctgctcaggaa
gccactgccaaggcgcaacaaacggaatctccttcagacgactga

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