Alcanivorax sp. NBRC 101098: AS19_11260
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Entry
AS19_11260 CDS
T03879
Name
(GenBank) phosphoric diester hydrolase
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_11260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_11260
03009 Ribosome biogenesis [BR:
aln03009
]
AS19_11260
Enzymes [BR:
aln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AS19_11260
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AS19_11260
Ribosome biogenesis [BR:
aln03009
]
Prokaryotic type
rRNA processing factors
AS19_11260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAP13977
LinkDB
All DBs
Position
complement(1232328..1235552)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE
LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE
AQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALV
SIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDVE
NRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLA
LSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNLDT
PHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPPPK
PVVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGRGG
NNRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNRAADN
RNDGRADTKDDGNRNERRGRNDNRRNNRNNDSRGEGRNDNRNGNRNDNKPDSKVSEGAKP
RTRKQDNAADGADSKSSDKGPKAPRRTDAKDNRPLRERQRPNKANNSDGGVAQPAKAQRT
AAPKPPRNEQPAPVDDEGHPATKLVPAQEPSAQAKRDDTPKKAATDKTAPLNEQSPVTNQ
PQAAAEPKQEQTVAPAKVQQPAAEQPPVTKAPVAQTTAAPKVEDDKPASAQPTASDTTTA
APAQEQPTPTADSTPQQPKADTPKAASTDDKPAPSAPQQAATTNAAPVAAQPATAAPTQT
PAPAKPAEENKSEEKPVTAEPAAPSRASNDPRSPGYKPTPVAPAPKVEEKPKPAPASNEL
PSRATEVKAVKAEAKPAAAEQGRASNDPRQRRREQLAAQEATAKAQQTESPSDD
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgcttattaacgccactcaccctgaagaagtacgggtggcactggtcgac
ggacaacgtctgtatgacctggatatcgaacaccgcacgcgggaacaaaaaaaagccaac
atttataaaggcaagatcacccgggtagaaccgtccctggaagccgcctttgtggatttt
ggcgcagagcgccatggctttcttcccctcaaagaaatttcccgccagtacttccaaaaa
gatcccaaggacatccagggccgcattaacatcaaggaagtcatcaaggaaggccaagaa
gttattgtccaggtggccaaagaagagcggggcaacaaaggcgccgccctcaccaccttt
attagcttggcgggtcgctatttggtgctaatgcccaataatcctcgcgccggcggcatt
tcccgccgtatcgaaggggaagagcgggctcagctgaaagaagccctaggcgccctgaac
atccccgacgaaatgggggttatcgtgcgcaccgctgggctgggccgcagtgctgaggaa
ttacagtgggacctgaactacctactgaaactgtggacctccatcgacgatgcctcacag
gatcgcaaggcacctttcctgatctatcaggaatccaacgttatcatccgcgccattcgt
gactacttgcgcaaagatatcggcgaagtcctgatcgattccaagaaagtttatgatgaa
gcccaaggtttcgttcagcaggtaatgcaggacttccagcacaaaatcaaactgtacgac
gacgaaaccccactgttctcccgtttccagattgagtctcaaatcgaaaccgcctttgag
cgggaagtgaagttaccctccggtggctcaatcgtgatcgacccgacagaggccttggtg
tccatcgacatcaactcctcccgcgccaccaaaggcgcagacatcgaagagaccgctctg
cagaccaacctggaagcggcggaagaaattgcccgccagctgcgcctgcgtgatatcggc
ggcctgatcgtggtggatttcatcgacatgggcccggcacgcaaccagcgcgacgtggaa
aatcgcatgcgcgatgccctggaagcagaccgtgcccgcatccagttaggccgcatctcc
cggtttggtttattggagctgtcccgtcagcgcctgcgcccgagcctgggtgaaacgtcc
agtatcgtttgtccgcgttgtgatggccaaggccacatccgtgatgtgaagtccctggcg
ctgagcatccttcgtcttatcgaagaagaagtgatgaaagagcgcaccggcgaaatccaa
gcccaagtaccagtagccgtggccacctacctactcaatgaaaagcgtgatccgctacgc
gccattgagaagaaccacaaagtgcgggtagtcattatccccaaccagaacctggacacg
ccccactttgaagtggaacgcatccgagatgaccaaacgtccacccagctgagccatgag
atggatctgctggaaggcaccaaggatgcagatattgcttccgctcaagacactgaaatt
aaaacccaagagccggccgtcagactaatggcaccggatactgccccgccgccgcccaaa
ccggtcgtcgcggccccgactgcgcaagtgcaaaatctgggattgcttgcccgcctattc
tcttggttggctcaagtgttcaccgccgaacccaaaccagccaaggcgaagaaagacgcc
ccccaacgcaaaagcgacaacaagcctcgccagcaacaaaacaatcgtggccgtggcggc
aacaaccgcaacgacagtaataacagcgataaccgcgctaagaacgataaccgcaacaag
cgtgatggcggcaaagccggtgataacgacaatcgcaacacccgcaacaagcgtcaaaac
gacaaagatagcggtcgcaagaatgataaccgtcaagcggacaatcgcgctgccgacaac
cgcaacgatggccgagccgataccaaggatgacggcaaccgtaacgagcgccgtggtcgc
aatgacaaccgtcgtaacaatcgcaacaacgacagccgtggcgaaggtcgcaatgacaac
cgaaacggtaaccgtaacgacaacaagcctgatagcaaggtaagcgaaggagccaagccg
cgcacccgtaaacaggataacgccgctgatggtgctgacagcaaaagcagcgacaagggc
ccgaaagccccccgccgcaccgatgccaaggacaaccgtcccttgcgcgagcgacagcgc
cccaacaaagctaacaacagcgatggtggcgtagctcaaccggccaaagctcagcgcact
gcggcccctaagccgccacgcaacgaacagccggcacctgtggatgacgaaggtcacccg
gcgaccaagctggtaccggcgcaggaaccttccgcacaagcgaagcgcgacgataccccc
aaaaaggcagcgacagacaagacggcaccgctcaacgagcaatcacccgttaccaaccaa
ccgcaagccgcagctgaaccgaagcaggaacaaaccgttgctccggccaaggtacagcaa
cctgctgctgaacaaccgcccgtcaccaaagccccggttgcgcaaaccaccgccgcacca
aaagtcgaggacgacaaacccgccagcgctcagcccacagccagcgacaccaccaccgct
gctccggcgcaggaacaaccgaccccgaccgccgacagcacgcctcagcagcccaaagct
gatacccccaaagcggccagcactgacgacaagccggcgccctctgcgccacagcaagcg
gcaaccaccaacgccgctccagtagccgctcaaccggcaacagccgcaccgacccaaact
ccagctccggccaagccagctgaagaaaataagtcagaggaaaaaccggtcaccgccgag
ccggcagcaccaagccgtgccagcaatgacccgcgctctccaggctacaaacctacccct
gtcgctccggcgcccaaggtagaagaaaagcccaaaccagcaccggccagcaatgagcta
cccagccgtgccaccgaagtgaaagccgtcaaagcagaagctaagccggccgccgcggaa
cagggccgagccagcaacgacccgcgccaacgccgccgtgagcagctcgctgctcaggaa
gccactgccaaggcgcaacaaacggaatctccttcagacgactga
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