Alcanivorax sp. NBRC 101098: AS19_12300
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Entry
AS19_12300 CDS
T03879
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_12300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_12300
03400 DNA repair and recombination proteins [BR:
aln03400
]
AS19_12300
Enzymes [BR:
aln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS19_12300
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS19_12300
DNA repair and recombination proteins [BR:
aln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AS19_12300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_CodY
EccE
Motif
Other DBs
NCBI-ProteinID:
BAP14081
LinkDB
All DBs
Position
1351672..1353582
Genome browser
AA seq
636 aa
AA seq
DB search
MLTLQQHLQQTFKLQGFRPGQERVINALLAGRSALAVFPTGGGKSLCYQLPALMLDGVTL
VVSPLIALMKDQVDQLHRLGIAAARLDSSVDAEQLQSIYRGLEDGSIKLLYVAPERLANE
RFLARLKRLSISMMAVDEAHCVSEWGHNFRPDYLKLAQLAKELEVGRVLALTATATPQVA
QQICDSFAIAPADHVQTGFFRPNLALSVRPYNVEERGRALLEALQARPSEPAIVYVTLQK
TATQVAALLSEQGLNAQAYHAGLKGEERHRVQEAFMSGQVNIVVATIAFGMGIDKADIRG
IYHYNLPKSLENYMQEIGRAGRDGEPSQCVLLASSDDLTMLENFSYGDTPDSEALAGLIG
WLMNQPAQFDLAVHELSGQFDVRPLVINTLLTYLELDGIIRSTAPFYTEYKLAFQISQAE
VLAQFDHERADFLRQVFAAGKEGRIWLTLKPIAVADQLQVDRVRILKAIGYLEQQGMVEV
RVAGVRQGYRMVNRPADPQALTAQIAEQFRVREQRDIQRLQQVCNWAQSSDCYQRGLVGY
FGEQLPQPCGQCSACKGEHQRFPERHRTAPDSAVILAVIAQRHGALATPRQLARFLCGIS
SPRASRARLARHPSFGSQMEVPFAEVLATCRAMLEP
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgctgacccttcagcaacacttgcagcagacattcaagcttcagggttttcgccccggc
caggagagggtcattaatgccttgctggccgggcgatccgcgctagcagtctttcccacc
ggtggtggtaagagcctgtgctaccaattacctgcgttgatgctggacggagtcacgttg
gtggtgtctccactgattgcattgatgaaagaccaggtcgaccaactgcaccgcttaggt
attgcggcggcgcggttggattccagcgtggatgccgagcagctgcagtccatctatcga
ggcttggaagacggcagtataaagttgctttacgtggcaccggaacgcctggccaatgag
cgctttctagcccggctgaaacggctatcgatcagcatgatggccgtggatgaagcccat
tgtgtgtctgaatgggggcataactttcgcccggattatttgaagttggcgcagttggcg
aaagagctggaggttgggcgggtgctggcgttaacggctaccgctacgcctcaagtggcg
cagcagatctgtgacagctttgccattgcccctgccgaccatgtgcaaaccgggtttttc
cgtcccaatttggcgttgagtgtccgcccctacaatgtggaagagcgaggtcgggcactg
ctggaagcgttacaggctcgtccctcggagccggcgattgtctatgtcactctgcagaaa
acggcaacgcaggtggcggctttgctgagcgagcaggggttgaatgcacaggcttaccat
gcgggattgaaaggtgaggagcggcatcgcgttcaggaagcgttcatgtcggggcaggta
aatatcgtggtggccaccattgctttcgggatgggtatcgacaaggcggatattcggggt
atctatcactacaacctgcccaagtccctggaaaactatatgcaggaaattggccgggca
gggcgagacggcgagccttcacaatgtgtgctgctggccagttcggacgacctgaccatg
ctggaaaatttcagttacggcgataccccagacagtgaagcgctagccgggctcattggc
tggctgatgaatcaaccggcgcagttcgaccttgcggtgcatgaattgtctgggcagttt
gatgtccgccctctggttattaataccctgctgacctatctggagctggacgggattatt
cgttcgacagcgccgttctatacggagtacaagctggcatttcagatatctcaagctgag
gtgttggctcagttcgaccatgagcgagcggattttttgcggcaggtctttgctgcgggt
aaagaggggcgcatctggctcactctgaaaccgattgccgtggcggaccaattgcaggtc
gatcgggtgcgaattctcaaggcgattggctatcttgagcagcagggcatggttgaggtg
cgtgtggcaggggtgcgccagggctatcggatggtcaatcgtccagctgatccgcaggcg
ttgacggcacagatcgcagagcagtttcgtgttcgtgagcagcgcgacatccagcggctg
cagcaagtatgtaattgggcgcaaagtagcgattgttaccagcggggcttagtgggttat
ttcggtgagcagttgcctcaaccctgcggccagtgcagtgcctgtaaaggcgaacaccag
cggtttcctgagcgtcatcggactgctcctgattcggcagtaatcttggcggttatagcg
caaaggcacggggctttggcgacccctcgtcaactggcccgttttctctgtggcattagt
agcccccgcgccagtcgggctcgactggcgcggcacccgtcgttcggatcacagatggag
gtgcccttcgccgaggtattggccacgtgtcgggcgatgctagagccgtaa
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