Alloactinosynnema sp. L-07: CRK55378
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Entry
CRK55378 CDS
T04489
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CRK55378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alo03400
]
CRK55378
Enzymes [BR:
alo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CRK55378
DNA repair and recombination proteins [BR:
alo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CRK55378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
TetR_C_25
Motif
Other DBs
NCBI-ProteinID:
CRK55378
UniProt:
A0A0H5CDN5
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All DBs
Position
I:389807..390613
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AA seq
268 aa
AA seq
DB search
MPEGHTLHRLARSHQKRFGGTAVEVSSPQGRFAAGASLVDGQVLRRAEAHGKHLFHVYGP
ETIVHVHLGLYGTFDETPLPALAPVGQVRMRLVGPTHWADLRGPTACEVLTRAEAKAVRD
RLGPDPLRRDADPDRAWTRISRSRTPLAVSLMDQAVIAGVGNVFRAELLFRHGVHPLTPG
TVLDRTLWTDMWTDLIDLMRLGVRRGRIDTVRDEHLPKATGRAPRVDRHGGEVYVYRRAG
MPCHVCGTEVAGQVLAARNLFWCPTCQA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaggccacaccctgcaccggctcgcccggtcgcaccagaaacgcttcggcggc
accgccgtcgaggtctccagcccacagggacgcttcgccgccggagcgtcccttgtggac
ggacaggtgctccgccgggccgaggcgcacggcaagcacctgttccacgtctacggcccc
gagaccatcgtgcacgtccacctcggtctctacggcacgttcgatgagacacccctgccc
gcgctcgcgcccgtcggccaggtccgcatgcgcctggtcggcccgacccactgggccgac
ctgcgcgggccgacggcctgtgaggtgctgacccgcgccgaggccaaggccgtccgcgac
cggcttggcccggacccgctgcgccgcgacgccgacccggaccgcgcgtggacgcggatc
tccaggtcccgcacgccgctggcggtgtccttgatggaccaggccgtgatcgcgggcgtg
ggcaacgtgttccgcgccgaactgctgttccgccacggcgtccacccgctcacccccggc
acggtgctcgaccggacactgtggacggacatgtggacggacctgatcgacctcatgcga
ctgggtgtgcgccgcggccgcatcgacaccgtccgcgacgagcatctgcccaaggccacc
ggccgcgcaccccgggtggaccgccacggcggcgaggtctacgtctaccggcgcgccgga
atgccctgccatgtttgtggaaccgaggtcgcgggccaggtcctagcggcccgcaacctc
ttttggtgccccacctgccaggcctag
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