KEGG   Alteromonas naphthalenivorans: ambt_19765Help
Entry
ambt_19765        CDS       T01513                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
alt  Alteromonas naphthalenivorans
Pathway
alt03030  DNA replication
alt03410  Base excision repair
alt03420  Nucleotide excision repair
alt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:alt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ambt_19765
   03410 Base excision repair
    ambt_19765
   03420 Nucleotide excision repair
    ambt_19765
   03430 Mismatch repair
    ambt_19765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:alt03032]
    ambt_19765
   03400 DNA repair and recombination proteins [BR:alt03400]
    ambt_19765
Enzymes [BR:alt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ambt_19765
    6.5.1.6  DNA ligase (ATP or NAD+)
     ambt_19765
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     ambt_19765
DNA replication proteins [BR:alt03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    ambt_19765
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     ambt_19765
DNA repair and recombination proteins [BR:alt03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     ambt_19765
   NER (nucleotide excision repair)
    Other NER factors
     ambt_19765
   MMR (mismatch exicision repair)
    Other MMR factors
     ambt_19765
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_A_N mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEF05444
UniProt: F5Z6D1
LinkDB All DBs
Position
4449126..4450727
Genome map
AA seq 533 aa AA seqDB search
MQAFSDLLEQLYYTAGTKAKAQLILHYLATTPDPDRGWAIAAMAGTLKFDFFKRNTVKKL
ITERVDPELFAMSYDYVGEVSETVAHLWPEFTPDKALPSLSEVVDTFANISKPKVAVTLA
NYLTIMTPSQRWALLKLGTRGLRIGVSARSIKQILAEYGNKDITEIEKLWHGVAPPYTDL
LEWLEGNGSKPDISNAVTFHPVMLSHPIAQDDVDDFAPEQWQIEHKFDGIRVQLVCNTTK
EEPEKALFSRTGDDISHAFPDLLDSVSGNMVLDGELLVMHNQEVDTFNALQQRLNKKKPT
AALMATNPAGLIVYDALVLDGKQLTDYPLTTRREALETWFDKNGIQEHDNDSRLHLSECL
SADSPKGLRTLHKNVCKNRAVEGLMIKRLSSPYVPGRPKGQWYKWKRDPLVVDAVMMYAQ
RGHGKRSSFYSDYTFGAWQDEQLLPIGNAYSGFTDEELKKLDNWVRRNAIGRFGPVREVK
KELVLEVAFDAVHPSNRHKSGVALRFPRIHRIRWDKPANEADTLINVKALIES
NT seq 1602 nt NT seq  +upstreamnt  +downstreamnt
atgcaggcatttagtgacttacttgaacagctttactataccgccggaaccaaagccaaa
gcgcagcttattctgcattaccttgctactacgccagaccccgatcgtggctgggccatt
gctgctatggcaggcacgctcaagtttgatttttttaagcgcaatacggtaaaaaaactg
attaccgaacgggtagacccagaactatttgcaatgagctatgattatgtgggggaagtg
agtgaaacggtagcccacttatggcccgagtttacgcctgataaagcattgcctagcttg
tctgaagtggtagatacatttgccaatatcagtaaaccaaaagtcgcagtaacgttagcg
aattacctcaccataatgaccccatctcagcgctgggcactcttaaaacttggtactagg
gggcttagaattggtgtgtctgctcgctctatcaaacaaattttggcggaatatggcaat
aaagacatcaccgaaatagagaaactgtggcatggcgtcgcgccgccttataccgacctt
ctcgaatggcttgaaggtaacggatctaaaccggatatcagtaacgcggttacctttcat
cctgtcatgctatctcaccccatcgcgcaagatgatgtcgatgactttgctccagaacaa
tggcaaatagaacataagtttgacggtattcgggtgcaactcgtttgcaataccacaaaa
gaagagcctgaaaaggcgctattttctcgcactggagatgacattagccatgctttcccc
gacctactcgatagtgtcagcggcaatatggtgctagacggtgaactgttggtgatgcat
aaccaagaagtagatactttcaacgcactacaacaaaggcttaataagaaaaagcctact
gctgcattaatggcaaccaaccctgcggggctaattgtttacgatgcactggtgctagac
ggtaagcaattaaccgactacccccttactacccgacgtgaagcgctagaaacgtggttt
gacaaaaatggcattcaggaacacgacaatgattcacgactgcatttatctgagtgctta
tctgccgattcaccaaaagggcttcgtactctacataaaaacgtgtgtaaaaaccgtgct
gtagaagggctcatgataaaacgtttaagcagcccttatgtgccaggtagaccaaaggga
caatggtataaatggaaacgcgacccactggtggtcgatgcggtaatgatgtatgcccag
cgaggccacggtaagcgctcgagtttttattccgactacacctttggtgcatggcaagat
gagcaattgctgcctattggcaacgcttattcgggcttcaccgatgaagagcttaagaag
ctagataactgggtaagacgaaacgccataggccgtttcgggccagtgcgtgaagttaaa
aaagagctggtactagaagtggctttcgatgcagttcatccctccaaccgtcataaatca
ggcgtagcgctacgatttcctcgtatacaccgtatccgctgggataagcctgcgaacgag
gcagatacacttatcaacgtgaaggcacttatcgaatcataa

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