KEGG   Arabidopsis lyrata (lyrate rockcress): 9304450
Entry
9304450           CDS       T01578                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 7
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082  ATP-dependent chromatin remodeling
aly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    9304450
   03083 Polycomb repressive complex
    9304450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:aly03036]
    9304450
Enzymes [BR:aly01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     9304450
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     9304450
   HDAC complexes
    Sin3A-HDAC complex
     9304450
    BRAF-HDAC complex
     9304450
    REST complex
     9304450
    SHIP complex
     9304450
    MiDAC complex
     9304450
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     9304450
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    9304450
  Chromatin remodeling factors
   NuRD complex
    9304450
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 9304450
NCBI-ProteinID: XP_020874107
LinkDB
Position
Unknown
AA seq 218 aa
MADSTSEHVIALKEAIHHDIIVKPGDNGPRILLPLSCFAPSDFENFHSTEYVEFLKSLTP
ETITILPSLKNLKQFNIDVDLDGPVFHNLFDYCRAYAGGTISAAAKLNRQEADIAINWAG
GMQNAKKDKASDFGYANDVVLGILELLKTFKRVLYVDIGFRHGDGVEEAFKDTDRVMTVY
FHKIGDSGDISDFGEGRGQYYSLNAPLKDGLDQGSKNP
NT seq 657 nt   +upstreamnt  +downstreamnt
atggcagatagcaccagtgagcatgttatagcattgaaagaagcgatacaccatgatatt
atcgtcaaacctggtgacaatggtccaagaattctactcccactaagctgttttgctcct
tccgatttcgaaaactttcactcgacggagtatgtcgagttcctcaaatccctcacgcca
gaaaccataaccatccttccgtctctcaaaaacctcaagcaattcaacatagatgtggac
ttggacggtcctgtcttccataacctcttcgattattgtcgtgcttacgctggtggtact
attagcgccgccgctaaattgaaccgtcaagaagcagatattgctatcaattgggccggt
gggatgcaaaatgcgaagaaagataaggcttctgactttggctatgccaatgacgttgtg
cttgggattctcgagttgctcaaaactttcaagagagttctctacgtagatattggcttt
cgtcatggggatggagtggaagaagcatttaaggacactgatagagttatgactgtttat
ttccacaaaattggggactccggagacataagtgactttggggaaggaagaggacaatat
tattcactaaatgcaccattgaaggatggtttagatcaaggttcaaagaatccctag

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