Arabidopsis lyrata (lyrate rockcress): 9304450
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Entry
9304450 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 7
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9304450
03083 Polycomb repressive complex
9304450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9304450
Enzymes [BR:
aly01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
9304450
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
9304450
HDAC complexes
Sin3A-HDAC complex
9304450
BRAF-HDAC complex
9304450
REST complex
9304450
SHIP complex
9304450
MiDAC complex
9304450
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
9304450
Heterochromatin formation proteins
Other heterochromatin formation proteins
9304450
Chromatin remodeling factors
NuRD complex
9304450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
9304450
NCBI-ProteinID:
XP_020874107
LinkDB
All DBs
Position
Unknown
AA seq
218 aa
AA seq
DB search
MADSTSEHVIALKEAIHHDIIVKPGDNGPRILLPLSCFAPSDFENFHSTEYVEFLKSLTP
ETITILPSLKNLKQFNIDVDLDGPVFHNLFDYCRAYAGGTISAAAKLNRQEADIAINWAG
GMQNAKKDKASDFGYANDVVLGILELLKTFKRVLYVDIGFRHGDGVEEAFKDTDRVMTVY
FHKIGDSGDISDFGEGRGQYYSLNAPLKDGLDQGSKNP
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggcagatagcaccagtgagcatgttatagcattgaaagaagcgatacaccatgatatt
atcgtcaaacctggtgacaatggtccaagaattctactcccactaagctgttttgctcct
tccgatttcgaaaactttcactcgacggagtatgtcgagttcctcaaatccctcacgcca
gaaaccataaccatccttccgtctctcaaaaacctcaagcaattcaacatagatgtggac
ttggacggtcctgtcttccataacctcttcgattattgtcgtgcttacgctggtggtact
attagcgccgccgctaaattgaaccgtcaagaagcagatattgctatcaattgggccggt
gggatgcaaaatgcgaagaaagataaggcttctgactttggctatgccaatgacgttgtg
cttgggattctcgagttgctcaaaactttcaagagagttctctacgtagatattggcttt
cgtcatggggatggagtggaagaagcatttaaggacactgatagagttatgactgtttat
ttccacaaaattggggactccggagacataagtgactttggggaaggaagaggacaatat
tattcactaaatgcaccattgaaggatggtttagatcaaggttcaaagaatccctag
DBGET
integrated database retrieval system