Arabidopsis lyrata (lyrate rockcress): 9305349
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Entry
9305349 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9305349
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9305349
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
9305349
NCBI-ProteinID:
XP_020875445
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MVKEWGNNGSKCWLCFTNVTGLVLNGSGILHPHGEAWWSSIEHSHRPRTIGFNGSSNIIY
NGLTQMNSPKNHISILNCTNVTLSNFHLIAPKDSPNTDGIDIALSNNIRIFNSSIQTGDD
CVAINGGSYDINITHVACGPGHGISIGSLGRGGENDTVQNVKVRHCSFNGTKNGARIKTW
TGGQGIAKNILYENITLTDANYPIIIDQHYCNGGHNCTKEATTAVKVSNVTFRYFKGTCA
NNIAIKLDCDEVTGCQDIVMEHINITSSSTNMPLTAYCQFADIVSHFVSMHIKCGFNEEP
LVPVRPPRHVEPPTPPTKPPTMFPKPLAPAKPPVYYAKPPVYYAKPPAPNAQPLAPNAQP
PMLSFLSYFI
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaggagtggggaaacaacggaagtaaatgttggttatgtttcacaaacgtgaca
ggtctcgtcctcaatggatctggtatcctccatccccatggcgaagcttggtggtcctct
attgagcactcccaccgaccacgaacaataggatttaatgggagtagtaacattatatat
aatggactaacccaaatgaatagcccaaagaatcacatttctattttaaattgcaccaac
gtaactttatcaaattttcatctaatcgcacctaaagatagtccaaatactgatggcatt
gatattgctctttcaaacaatatccggatttttaactcatctatccaaaccggtgatgat
tgtgttgcgataaatggtggttcgtatgatatcaacataactcatgtagcatgtggtcca
ggtcatggcatcagtattggaagtttggggagaggtggggaaaacgatacggtacagaac
gtgaaagtaagacactgcagcttcaatggaacaaaaaatggagcaagaataaagacttgg
actggaggacaagggatcgccaaaaatatattatacgagaatataacattaacagatgcc
aattaccctatcatcatcgatcaacattactgtaatggtggccacaactgtacaaaagag
gcgacaactgctgtgaaagtgagcaatgtgacatttagatactttaaagggacatgtgca
aataatattgccataaaactagattgtgatgaagtaactggttgtcaagatatcgtgatg
gaacacatcaacatcacttcttcatctacgaatatgcccctaaccgcatattgtcaattt
gcggatatagttagtcactttgtctcgatgcatatcaaatgtggtttcaatgaagaacct
ttagtaccagttagacctccacgacatgttgaacctccaacgccgccgactaaacctcca
accatgtttcctaaacctctggcaccagctaaacctccggtatactatgctaaacctccg
gtatactatgctaaacctccagcaccgaatgctcaacctctagcaccgaatgctcaacct
ccaatgttgtcttttctttcttactttatttaa
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