Arabidopsis lyrata (lyrate rockcress): 9316920
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Entry
9316920 CDS
T01578
Name
(RefSeq) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9316920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9316920
03009 Ribosome biogenesis [BR:
aly03009
]
9316920
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
9316920
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
RNases
9316920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
9316920
NCBI-ProteinID:
XP_002880853
UniProt:
D7LFF2
LinkDB
All DBs
Position
Unknown
AA seq
223 aa
AA seq
DB search
MNKLSNAFSLLAFADEDAPMASSSSSTGKQEERVNGSLEDGDYKQPLVWIDLEMTGLNVE
VDRILEIACIITDGNLTKSVEGPDLVVHQTKDCLDKMGEWCQTHHGDSGLTKKVRLSTIS
EREAEQKVIEFVRKHVGSENPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALC
SRWFPIEKRRAPAKKNNHRAMDDIRESIKELKYYKKTIFKARK
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaactctccaacgctttctctctgctagctttcgccgatgaagatgctccaatg
gcttcttcttcttcttccactgggaaacaagaagaaagagtaaatgggtcacttgaggat
ggagattacaagcaaccacttgtttggattgacttggaaatgactggtctaaatgttgaa
gttgacaggatattggagattgcttgtataattactgatggaaatttaaccaaatcagtg
gagggtccagatttggttgtacatcaaacgaaagactgtttggataaaatgggtgaatgg
tgtcaaactcatcatggagatagtgggttgacaaagaaagtgcgccttagtacgataagt
gaaagggaagctgagcaaaaggtcattgaattcgtaaggaagcatgttggttctgaaaat
ccacttctagctggaaactcagtctatgttgatttccttttcttaaagaagtacatgcca
gaattagctgcccttttccctcatatacttgtcgacgtcagtagcgtcaaggctctatgc
tcccgatggttccccatagagaaaaggagagctcctgcaaagaaaaacaaccacagagcc
atggatgatataagagaaagcataaaggaacttaagtactacaagaaaacaatattcaaa
gcaaggaaatga
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