Arabidopsis lyrata (lyrate rockcress): 9318101
Help
Entry
9318101 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9318101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9318101
03036 Chromosome and associated proteins [BR:
aly03036
]
9318101
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9318101
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
9318101
mRNA degradation factors
5'-3' decay
Decapping complex
9318101
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
piRNA pathway
9318101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
9318101
NCBI-ProteinID:
XP_020883116
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MNNNRGRFPPGIGAAGPDPNFQSRNPNPSPHQSQPQQYLQSRTPFPQQPQTQPPQYLQSQ
PDVQQYVQRGYPQQIQQQQQQQQQQQQQQWSRRPQLPGDPSYVDEVEKTVQSEAISDSNN
EDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPI
ALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSK
YLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADK
LLSVEFQPSIEELIQFLPENRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLTLMGVT
QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQ
DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGH
LGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaataataatagaggaaggtttccaccggggattggagctgcgggtccggatcctaat
tttcagtcacggaatccgaatcccagtcctcatcaatctcagcctcaacagtaccttcag
tcacggactccgtttccacagcaacctcaaactcagcctccacagtatctccagtctcaa
cctgatgttcagcagtacgttcaacgaggctatcctcagcagattcaacaacaacaacaa
cagcagcagcagcaacaacaacaacaatggtctagacgccctcagcttcctggtgatcca
agttatgtagacgaagtcgagaaaacggttcaatctgaagctatcagcgattctaataat
gaagactggaaagcaactttaaagctgccaccacgagataatcgttaccagacagaggat
gtgactgccactaaaggaaatgaatttgaagattactttttgaagagggatctgcttagg
ggaatttatgagaagggttttgaaaaaccatctcctattcaggaagaaagcattccaatt
gctttaactggcagtgatattcttgctagagccaaaaatgggactgggaagactggtgcc
ttctgcattcctacccttgagaaaattgatccagagaacaatgtcattcaagctgtaatt
ctagttccaacccgagagttggcccttcagacatcccaggtttgcaaggagctttcgaaa
tatttgaaaattgaggttatggtcaccactggcggtaccagtctgagggatgatatcatg
cgattatatcaacctgtccatttgttggttggaactcctggaagaatattagatcttgcc
aaaaagggtgtgtgtgttttgaaagattgtgcgatgcttgtaatggatgaggccgacaag
cttttgtctgtagaatttcaaccgtctatagaggagttgatacagttcttgccagagaac
cgtcagattctgatgttttcggctacatttcctgtcactgtgaagtctttcaaggatcga
tatctcaggaagccttacattatcaatctcatggatcagctcacacttatgggtgttacc
caatattatgcttttgttgaagagagacagaaggtgcactgccttaacacgctattctct
aagctacaaataaaccagtccattatcttttgcaactctgttaatcgtgttgagctgtta
gccaagaaaataacagaactcggttactcatgcttctatatccatgcaaagatggttcaa
gaccatcggaacagggttttccatgatttccgcaatggtgcatgcagaaatcttgtttgc
actgatttgtttacacgtgggattgacattcaagctgtgaatgtggtcataaatttcgat
tttcctaggacttctgagtcgtatctacatagggtaggcagatcaggacgatttggacac
cttgggttggctgtgaatttggtaacttatgaggaccgcttcaaaatgtatcagactgag
caagaacttggaaccgaaatcaagcccataccttcacttatcgacaaggcaatctactgt
cagtaa
DBGET
integrated database retrieval system
