KEGG   Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_888040Help
Entry
ARALYDRAFT_888040 CDS       T01578                                 

Definition
(RefSeq) ATLIG1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
aly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ARALYDRAFT_888040
   03410 Base excision repair
    ARALYDRAFT_888040
   03420 Nucleotide excision repair
    ARALYDRAFT_888040
   03430 Mismatch repair
    ARALYDRAFT_888040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    ARALYDRAFT_888040
   03400 DNA repair and recombination proteins [BR:aly03400]
    ARALYDRAFT_888040
Enzymes [BR:aly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ARALYDRAFT_888040
    6.5.1.6  DNA ligase (ATP or NAD+)
     ARALYDRAFT_888040
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     ARALYDRAFT_888040
DNA replication proteins [BR:aly03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    ARALYDRAFT_888040
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     ARALYDRAFT_888040
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     ARALYDRAFT_888040
   NER (nucleotide excision repair)
    Other NER factors
     ARALYDRAFT_888040
   MMR (mismatch excision repair)
    Other MMR factors
     ARALYDRAFT_888040
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 9328500
NCBI-ProteinID: XP_002892438
UniProt: D7KHZ2
LinkDB All DBs
Position
Unknown
AA seq 793 aa AA seqDB search
MLAIRSSNYLRCLPSLCTKTQISQFSSVLLSFSRQVSHLRLSSCHRAMSSSRPSAFDALM
SNARAAAKKKTPQTTTSSRSPNKRKIGETQDANLGKTLVSEGTLPKTEDPVEPISDSAKP
RSDTSSIAEDSKTGTKKARTLSKTDKIDEMKSKIGLLKKKPNDFDPEKVSCWEKGERVPF
LFLALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVATVYLAANEIAPAHEGVELGI
GEGTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFR
QIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVY
NEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTGGVWNLPKTCNFTLGVPIG
PMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFLEDGTFEIYSRNAERNTGKYPDV
ALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFD
MLYLNGQQLIQENLNIRREKLYESFEEDPGYFQFATALTSSDIDEIQKFLDASVDVGCEG
LIIKTLNSDATYEPAKRSNNWLKLKKDYMDSIGDSMDLVPIAAFHGRGKRTGVYGAFLLA
CYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEV
WEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEDATSSEQIADMYQAQK
HNHPSNEVKGDDD
NT seq 2382 nt NT seq  +upstreamnt  +downstreamnt
atgttagcgattcgatcgtcgaattacctccgatgcttaccttctctctgtactaaaacc
caaatctctcaattctcctccgtgttactgtcttttagccgccaagtttcccacttgcgc
cttagctcgtgccatagagccatgtcttcttcccgcccttctgcatttgacgctctcatg
tccaatgctcgtgcagccgccaagaagaagacgccccagaccactacatcgtctcgctct
ccgaataaaaggaaaattggggaaacccaagatgctaatttgggcaaaacccttgtttcc
gaaggtacacttccaaaaacggaggatccggtggagcctatttctgattctgcaaaaccc
agatcggatacgtcgtcaattgcggaagactcaaagaccggaacgaaaaaggctaggact
ttgagcaagacggataaaattgacgaaatgaagagcaaaattggattgttgaagaaaaag
cctaatgatttcgatcctgaaaaagtgtcttgctgggagaaaggcgagagagttccgttt
ctgtttctcgcattggcttttgatctgatttcaaatgaaagtggccggattgtgattact
gatattctgtgtaacatgttgagaaccgttattgccaccactcctgaggatttggttgct
actgtttatcttgcggcaaatgagattgcccctgctcatgaaggtgtagaattgggaatt
ggtgagggtacaattatcaaggctatctctgaagcttttggtagaactgaggatcatgtt
aagaagcagaatacggaactgggagacttggggcttgttgcaaaaggaagccgttcaact
cagactatgatgttcaagcccgaaccattgactgttgtcaaggtgttcgatacgtttcga
caaattgctaaggaaagtggaaaagatagcaatgaaaagaagaagaatcgaatgaaggca
cttcttgtcgcaacaacagactgtgaaccactttacttaacacgtttacttcaggcaaaa
ttgcggttagggttctcaggtcagactgtcttagctgccttgggacaagctgctgtatat
aatgaagagcactcaaagccacccccaaataccaagtctcctttagaagaggctgcgaag
attgttaaacaagtatttacggtacttcctgtctatgacattattgttcctgctcttcta
accggtggagtgtggaatcttccaaaaacttgtaactttacattgggtgttccaattgga
cccatgcttgcaaaaccaaccaaaggtgtagcagagatactgaataaattccaggacatc
gttttcacatgcgaatacaaatatgatggggaacgtgcacagatacattttttggaagat
ggtacatttgagatatatagtcgaaatgctgaaagaaacactgggaagtacccggatgtt
gctcttgcattatcaagattaaagaagccctctgtgaaatcttttattctggattgtgag
gttgttgctttcgacagggagaaaaagaaaattcttccgttccagattttgagcactcga
gcccgtaaaaatgtgaatgtcaatgatatcaaggttggcgtatgcatctttgcttttgac
atgttatatctaaatggccaacaacttatccaagagaatcttaatattcgccgagagaag
ctatacgaatcatttgaagaagatcctgggtatttccagtttgcaactgctctaacatct
agcgatatcgatgaaatccagaagtttcttgacgcttctgttgatgttggctgtgaaggt
ttaatcattaaaacattgaactcggatgctacctatgagcctgccaagcgatcgaataat
tggctaaaactgaagaaagactatatggacagcattggggactcaatggatcttgtacca
attgctgctttccatggacgtggcaaacgcacaggtgtctatggtgcatttttactcgct
tgctatgatgttgataaggaagagtttcagagcatttgtaaaatcggtactggattttct
gatgccatgcttgacgaacggtcgtccagtcttcgctctcaagtgattgctactccaaaa
caatactaccgagttggagacagcctcaatccagatgtttggtttgagcccactgaggtc
tgggaagtgaaagcagctgacttgacaattagccctgtgcaccgtgcagctaccggcatt
gtggatcctgataagggaatttctcttcgttttcctcgtctacttcgtgtacgggaagac
aaaaagccagaggatgcaacatcatctgagcagattgctgatatgtaccaagctcagaaa
cacaatcatccaagtaatgaagtcaaaggtgacgacgattga

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