Alteromonas sp. Mac2: AV940_11230
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Entry
AV940_11230 CDS
T05899
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
alz
Alteromonas sp. Mac2
Pathway
alz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AV940_11230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alz03400
]
AV940_11230
Enzymes [BR:
alz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AV940_11230
DNA repair and recombination proteins [BR:
alz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV940_11230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
SpecificRecomb
DUF494
Motif
Other DBs
NCBI-ProteinID:
AMJ90990
LinkDB
All DBs
Position
complement(2659835..2663872)
Genome browser
AA seq
1345 aa
AA seq
DB search
MSFSNSERSTSASSTKEAKLLNVPAMPLKGRHLIEASAGTGKTYNITRLYLRLLLEKKLN
VKEILVMTFTKAATEEIKGRVAKTLREATAFWEACLQVDDSDTGDSSAINEKENSASGLN
ENADLAALLNRTDPVYAHLYRACAPKESLALLKAAQLELDDASVFTIHGFCQHVIGQLAF
NSGFAMALNLSKDTSDIYLQAAQDWIRKVSQNEADFMLLAEQGWHVPDSLLNEFSSSVRS
ALTPVLLDEETIEKAFTASLHENESTAPAQFTFHYNNIVDNETLIHEQLLKKPDHKAVRT
PELAALKSWLESAEYEPLPREGAAFLDGRRFARNKSGVKEILAPIKGFADAVIAACKEKQ
DNLDKIPVFTLVNDAISFIKTNVAAQKQQLGVIDFDDLIRMLADEVVKPNNSLVPELRKK
FPVALIDEFQDTDAKQYAILDAVYPKADANVCDVNATEGTGFESGLAFEENAGVESGYGK
RNSDNALLMIGDPKQAIYRFRGGDIFTYLKAGQQADYRWVMNTNWRSVAGMVKAYNRLFY
GAPVPQTPNPKESSFRNVFGFNIQYNPVEFTPNAAAATHPLHDPNDERDAMNYVSFSLDE
KSDANTLRRGLAQWIAQEIYRLFNEVTFVDEKEPTNPVRPVKPADIAILVKNRNEASVIK
YVLQQQGLACVYLSDRSNLFATPEAKDVLRLLNGVWHNTDTSKVASSLASPLWGYTPQTL
VNLLYHEDDALWDEAYDKVSSLRDMWLQKGCMSVLLHLMQENYTPYGGEVERALTNYQHL
AETLEKAGATHQRPEQLLDWLHKQIHQPESDEEMTLRLESDSQLIRLVTQHGSKGLEYPI
VFVPFATGYRDPAKSGKSYSQIFTYYDEQSQELQLQLGRTNSAIERVRKEGDAEEMRLAY
VAVTRAAHRCYMGILPLDGHEKSALAHALNINDDEGRDWGTMLDAIANEPDAHATHISAD
SLAHEYSSFDSTETLVPLSTLTFEGTSSEDWRLYSFSAISRMTVMSVSQAAKEVSQTVPS
IPVMQTVRDEEITSDDAFAVTSGEVVSQNQIRFTLQKGASAGNLLHDLLELNDFSAPNWD
ENGAELAVRFGLEASRTADLYTWLDEVLATPLGTKQSPSHLTLSDLSLAQTLREAEFYFP
MNESKWSELKHILFEHRKSVAKQLALEHGGESDIDLPIAEPVQAEPVPSLMMSALEGMMH
GFIDLIFTHEGKYYVADYKSTWLGDSVSHYKPQALNANNQHHLYDLQYLIYCLALHRYLK
NAIVDYTPEVHFGGVYYLYLRGMHPSNTNGEGVFFTSIDSVTLQALDTLFLGPVIAEDKA
SVQKLSDDHALNGPSPDAVQGELDL
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctaacagtgaaagatctacaagtgcctcatccacgaaagaagctaaattg
ctaaacgtgccagctatgccgctaaaaggaaggcatttaattgaagccagtgcgggcaca
ggtaaaacctataacatcactcgtttatacttacgcttattgttagagaaaaaacttaac
gtaaaagagattttggtgatgaccttcaccaaagcagctaccgaagaaattaaagggcgt
gtggccaaaacgctacgagaagccaccgcgttttgggaagcgtgcctgcaagtcgatgac
tctgatacaggtgatagcagtgcgattaatgagaaagaaaatagcgctagcggtttaaat
gaaaacgctgacttagctgcgctattaaacagaaccgatcctgtctatgcccatttatat
cgagcctgtgcacctaaagaaagtttggctctgctaaaagccgctcaactagaactcgat
gacgcgtcagtctttactattcatgggttttgccaacatgtgattgggcaactagcgttt
aatagtggttttgcaatggcgctgaacttaagtaaagacactagcgatatttatttgcaa
gcggcgcaagattggataagaaaagtctcacagaatgaagccgatttcatgttgttggct
gaacaaggctggcatgtaccagacagcctattaaatgaattttcttcaagtgtaagaagc
gcgcttacaccggttttgctagatgaagaaaccatagagaaggcttttaccgctagcctg
cacgaaaacgagagtactgcgccagcacaatttacgttccattataataatattgtggat
aacgaaacgcttattcacgaacaactacttaaaaagcctgatcacaaagcggtgcgcacg
cctgaactcgctgcacttaaatcctggcttgaaagcgctgaatatgagccgttaccgcga
gagggcgccgcgtttcttgatggccgccggtttgctcgaaacaagtctggggtaaaagaa
attcttgcgcctattaaaggctttgccgatgccgtaatagcggcatgcaaagaaaagcaa
gataacctcgataaaatccctgtttttacgcttgttaacgacgccattagctttattaaa
accaatgtggcggcacaaaagcagcaacttggcgttatcgactttgacgaccttattcgt
atgctcgcagatgaagtggttaagcctaataacagcttagtgcccgagcttagaaagaaa
ttccccgttgccttaattgatgaatttcaagataccgatgccaagcaatacgctatttta
gatgcggtctaccctaaagcggacgctaatgtctgcgatgtgaatgctacagaaggcacg
ggcttcgagtccggcttagctttcgaggaaaatgctggcgttgaatcaggttatggaaag
cgaaatagcgacaacgcgctactcatgattggcgaccccaaacaagcgatttaccgcttc
aggggcggcgacatttttacttatttaaaagcaggacagcaggcggattatcgttgggta
atgaacaccaactggcgttcggtggccggcatggtgaaggcctataaccggttgttttac
ggcgcgccggttccgcaaacgcccaatccaaaagagtctagctttagaaatgtgttcggc
tttaatattcaatacaatccggtggaatttacacccaatgccgcggcagcaactcaccca
cttcacgatcctaacgatgaacgtgatgcaatgaattacgtgagttttagtttagatgaa
aaaagtgatgcgaatacgctacgccgtgggttagcgcagtggatagcccaagagatttac
cgtttgtttaacgaggtgacttttgtagatgaaaaggaacccactaaccccgttaggcca
gtaaaacctgccgatattgccatattggtaaaaaatcgtaatgaagcctcggtaattaaa
tatgtattacagcagcaaggcttggcctgcgtttatttgagcgatagaagtaatttattt
gctacccccgaggctaaagatgtactgcggttacttaatggtgtgtggcacaacactgat
actagcaaggtggcctctagtttggcttcacctttatgggggtatacaccgcaaaccctc
gtaaacttgttgtatcacgaagacgatgcgctatgggatgaggcttacgacaaggtctcc
tcattacgtgatatgtggctacaaaaaggctgcatgagcgtattgctgcatctgatgcaa
gaaaactacacgccatatggtggcgaagtagagcgtgctcttactaattatcagcatcta
gcggaaacgttagaaaaagcgggggctacccatcagcgcccggagcagttacttgattgg
ctacacaagcaaattcatcagcctgaaagcgatgaggaaatgacccttagacttgaaagt
gacagccagttaatacgcttggttacgcagcatggctctaagggtttagagtatcccatt
gtgttcgtaccctttgctacaggttaccgtgaccccgcgaaaagtggaaaatcgtactcg
caaatattcacctattacgacgaacagagccaagaattgcagctacaattgggccgcact
aattcggcaattgaacgggtacgcaaagagggcgacgcagaagaaatgcgattagcttat
gtggctgttacccgagccgcacatcgatgttatatgggcatcttgccattagacgggcat
gaaaaaagtgccttggcccatgcgttaaacatcaatgacgatgaagggcgtgattggggc
actatgctagacgccattgctaatgaacctgacgcgcacgccactcacattagtgccgat
tcactagcgcatgagtattcaagctttgacagcacggaaacgcttgtccccttaagtacc
ttaacctttgagggtactagcagcgaagattggcgattgtattctttctcggctattagc
cgcatgacggtgatgtcagtaagccaagcagcaaaagaagttagccaaacagtacccagc
attcctgtcatgcaaacagtgcgagacgaggagataacatcagatgatgcttttgcggtt
acctctggtgaggtcgtttcacagaaccaaatacgctttaccctacaaaaaggggcgagc
gccggtaatttactgcatgacttacttgagcttaacgatttttcagcgcctaattgggat
gaaaatggtgctgaactcgccgttagatttgggttagaagcatcacgtactgccgattta
tatacctggttagacgaagtactggctacgccactgggtacaaaacagtcgccaagtcat
ttaaccctgtcagacctttcactggcgcaaacgcttagggaagcagagttttattttccc
atgaacgaaagtaaatggagtgagctaaaacacatattgtttgaacacagaaagtctgtg
gcaaagcagcttgcgttagagcacggtggcgaatcagacattgatttacctatagcagag
cctgttcaggccgagcctgttccgtctttaatgatgtcggctcttgagggcatgatgcac
gggtttatagacttaatattcacccatgaaggcaagtactatgttgccgattataaatct
acgtggcttggcgatagcgtatcgcactataagcctcaagcattaaacgctaataatcag
catcatttgtacgacttacagtatttaatttattgcttagcactacacagatacctaaag
aatgccattgttgactatacgcccgaagtgcactttggtggcgtgtactatttgtattta
cggggcatgcatccaagcaatacgaacggggagggcgtctttttcacgtccatagattcg
gtaacgctacaggctttagataccttgtttttaggccccgtgattgcagaagataaagct
tcagttcagaagctttcagacgatcacgccttaaatggcccgtcgccagatgcagtgcaa
ggggagttggacctatga
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