Anaplasma marginale St. Maries: AM262
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Entry
AM262 CDS
T00216
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ama
Anaplasma marginale St. Maries
Pathway
ama03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ama00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AM262 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ama03021
]
AM262 (rpoB)
03400 DNA repair and recombination proteins [BR:
ama03400
]
AM262 (rpoB)
Enzymes [BR:
ama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AM262 (rpoB)
Transcription machinery [BR:
ama03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AM262 (rpoB)
DNA repair and recombination proteins [BR:
ama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AM262 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
Bac_rhamnosid_C
Motif
Other DBs
NCBI-ProteinID:
AAV86365
UniProt:
Q5PBG4
LinkDB
All DBs
Position
215769..219917
Genome browser
AA seq
1382 aa
AA seq
DB search
MSSAGGSSGPGYVLNDFDAVPRLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDGSSGI
QSIFEAMFPIRDLLGRAVLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQE
VSFKEVKYVVDEDTSERSVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGV
FFDSDKGKTYSSGKLIYSARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGM
SNNDILDAFYDKVIYTRCDKGWRVPFIVDRFKGVRLSYDLMDVDGSVLVKANTRITLRIA
KKLYADGLREYMVPFSGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIA
FLNIDFLTVGPYVLNTLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESER
YDLSVVGRIKLNSHLGLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVR
SVGEFIENQFRIGILRLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQF
MDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISS
LAIYAKINKYGFIESPYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDML
YCRHGGNFVMVKSEDVDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLK
SEAPLVGTGMEFVVAAGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDECLGVDIYRLRK
FQRSNHNTCINQRPVVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDS
IVISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGA
EVSASSILVGKVTPRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFV
RRGVEENDRSLLIKQSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKVKGYSDLDSF
FAEASDDTLWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLT
IVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMN
IGQILETHLGWAAVNLGKKIGRILDKGGPSMIADLRDFLDKIYDGQKLKSDIASMSSEAL
LVFANRLRKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGY
IYMLKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQE
MLTVKSDDIVGRVKIYESIIKGDSNFECGIPESFNVMIKELRSLCLNVVLKQDKEFTSGE
VE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcgggtggttcttctggtcccgggtatgtgctgaatgatttcgacgctgtt
cctaggctctcttacgcgaaatccatagacattcgcgattctttgacggatctcataagg
atacaaagggattcttatgacgcgtttataggtatagatagggatgggagcagcggcata
cagagcattttcgaggccatgtttcccatacgcgatcttctgggtagagcagtgctcgag
tttgtgggctacaacataggcgagccgcagtatgatgaatacgagtgcattaagcgcgga
attactttttccgttcccatacgaattaccctgcgctttgttgtatggaaagtgcaggag
gtgtccttcaaggaagtcaagtacgtggttgatgaggatacctcagaacgtagcgtgaaa
tatatgaaagagcaggaagtttccattggtgatttgccgatgatgacttcatatggaact
ttcataatcaacggaatagagcgggtaatagtttcccagatgcaccgttctcccggggtc
tttttcgacagcgataagggtaagacttatagctcgggtaagctcatttactccgcgcgc
gttataccatacaggggctcctggctcgattttgaatttgacatcaaagacataatttat
ttccgcatagacaagaagagaaagctccccgtatcttacttgctaaaagccttggggatg
tcaaataacgacatccttgacgcgttttacgacaaggtgatttacacgaggtgcgacaag
gggtggagggtgcccttcattgttgaccgattcaaaggtgtgcgcctttcctatgatctc
atggatgtcgacggcagcgtgcttgtgaaggccaataccagaattaccttgagaattgca
aaaaagctgtacgctgatgggcttagggaatacatggtgccgttctctggcattaccggg
atgttcgttgcagccgatcttgtagatccgagtagtggtgcggtcatcgtgtctgcgggt
gagaccataacgtctgagcatatagtgaagctagagctgtttgatatcagcgagattgcg
tttttgaatatcgacttcctcacagttggtccgtacgtgttgaacacactgttcctggac
aagaatatgacgcaggaagatgcgctgttcgagatttacagagtgcttcgttctggtgag
tcccctaaccttgatgcagtgaagtcctttttcaaggggctgttcttcgagtcagaaagg
tacgatctgtcagttgttggtagaataaagctgaacagccatctaggcctggatgttgac
gagaacacgactgtgctcaccaaagaggacatagtgcaagtagtgaaaaagctggtcttg
ctgcgtgacggcgagggtgttgttgatgacatagaccaccttggaaacagaagggtcagg
tctgttggggaattcattgagaatcaattcaggatagggattttgcggttggagcgcatg
attatggactatatgtcctcggtgaactttgacaatgcgatgccctgtgatttcgtcaat
cctaaggtgctggctacagtacttaaggactttttcagctcatcgcagctgtctcaattt
atggatcagacgaatcccctgtccgaagttacgcataaacgcaggctgtctgctctaggg
ccgggtggcttaaccagagaaagggcgggatttgaggttcgtgacgtgcatcccacgcac
tacgggaggatatgtccgatagaaactcctgaaggtcagaatattggccttataagcagc
cttgccatatatgccaagattaacaagtacgggtttatcgagagcccgtaccgcaaggtt
gaaaatagggtggtgacggataaagtagagtacctgttggcgatgcaggagggcgactat
tacatcgctgatgccggggcagccatagatgagaacaatcgttttgtggatgatatgctc
tactgtaggcacggtggcaactttgtgatggtgaaaagcgaagatgttgactacgtcgac
gtttccccaaagcagatagtgtctgtagcggcctctctcataccgtttttggagaacaat
gacgcaaaccgtgccctgatgggctccaacatgcagcgccaggccgtacccttattgaag
tcagaggccccactggttggaaccgggatggaatttgtagtcgctgccgggtccggtgcg
gtggtgttggcgaagcgtgacggcatcgttcaccgcgttgatgggtcctacatagtaatc
cgcgcttttgatgccaacaaggatgagtgtttgggtgttgatatttatagactcaggaag
tttcagcgctctaatcacaatacatgcattaaccaacgacccgtggttaaacttggagat
tatgtgaaggccaatgacgtgatcgcggatggttcggcgattgacaggggagagttggcg
cttgggaagaatgtacttgtggcctttatgtcttggcaaggttacaactttgaagattcc
atagtaatttcgagcgacgtagttaaacgggatgtgtttacctccatacacatagaggag
ttcgagtgcgttgtaagggatacccccttaggtcccgagaagataatgcggtctgtgcct
gatgtaaatgaggaaagtctgagtcacttagacgatgttggaatcgtgaacataggtgcc
gaggtatctgcaagtagtatcctggtgggcaaggttacgcctaggcccccggtgtctctt
cctcctgagactaagctgcttgtcaccatatttggtgaaaaggtcttcgactgtgttgac
tcttcgctctatctgccgccggacgttgagggaactgtcatagacgttcatgtgtttgta
aggcggggggtagaggagaacgataggtcgctgctaatcaagcagagcgaaataagtagc
tttgtgaaggagcgggactatgagatcgacgtcgtgagcgaatacttccatgacgaactc
aggaaactgctccgcaatgcgggggtgaaagtcaaggggtacagcgacctcgatagtttt
tttgctgaggcgtctgacgatacactctggagtactgggcttgctgatgcaaaagtggct
gctaaagtcaaagatatgagggagaggtttgactccatcgttggcgaggcacatcgcaaa
tttgagcagaaagtagataagctgaactacggctacgatctgcctcagggcgtgttgaca
atagtcaaggtttttgtggcggttaagcacaatttacagcctggggataagatggccggt
aggcacgggaataagggggtgatatcaagaatcgttcccgcggaagatatgcctcacttg
gaagacggaaccccagtggatatcatactcaactctctaggtgtgccctcccgtatgaat
atcggacaaattctggaaacccatctgggttgggccgctgtgaatctgggcaagaagata
ggcaggatactcgataagggcgggccgtctatgatcgctgaccttagagattttctagat
aagatctacgatgggcagaagctcaagagcgacatagcgtctatgtcatctgaggcgttg
ctagtgtttgccaataggctgcggaagggtgtgcctatggctgccccagtgttcgagggc
ccgaaggacgcgcaaatttccaagttgttggaactagctgaggttgatccgtctgggcag
gtatatctttacgacgggcgcttgggtaagaaatttgatcggaaaataaccgtggggtac
atatatatgttgaagttgcaccacctggttgatgacaaaatacatgctagatctgtgggc
ccatacggtttggtgacccagcaacctctgggtggtaaatcccattttggagggcagagg
tttggtgagatggaatgctgggcgctgcaggcttatggtgcagcgtataccttgcaggag
atgcttacggtgaaatccgatgatattgtaggtcgggtcaagatttatgagtccataata
aagggtgatagcaactttgagtgtggtattccggaatcattcaacgttatgatcaaggag
ctgcgctccctgtgtctcaatgttgtactgaagcaggacaaggagtttactagtggcgaa
gtggagtag
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