Alteromonas mediterranea DE1: amad1_03465
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Entry
amad1_03465 CDS
T02340
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
amad1_03465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaa03021
]
amad1_03465
Transcription machinery [BR:
amaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
amad1_03465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
AFV84219
LinkDB
All DBs
Position
complement(769222..771057)
Genome browser
AA seq
611 aa
AA seq
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MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP
DADELLMQEANADEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIISGFVDPNDDQDLAPTATH
VGSELSEEELDDEDGDDDEDEDEEEDDSGVDPELARERFSELREQYIKTREVIEKKGRSH
ADSRTQINALSDVFKEFRLVPKQFDRMVKNMRAMMDKVRIQERLVMKFCVVNAKMPKKDF
IKAFAGNETSTAWLHEAVKSGAPYAADLAVNQEEIERCISKMNQVEQETGLVIADIKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKG
ATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEQLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaaactcctgattgcaaaaggtaaagagcaaggt
tacttaacctttgcagaagttaacgaccacctgccgcaagatattgtcgattctgatcaa
atcgaagacataatccgcatgattaacgacatgggaattcaagtttctgaatcagctcct
gatgcagatgaacttctcatgcaagaagcgaatgctgacgaagatgccgcggaagcggcg
gcgcaagcactggctaccgtagaaagtgaaattggccgtacaactgacccagttcgcatg
tatatgcgtgaaatgggtactgttgaacttcttactcgtgaaggcgaaattgaaatcgct
aagcgaattgaagacggtataaaccaagtacagtgttcggttgctgaatacccagaagcg
atcacttacctgttagatcagtgggacctttacgaagccgaagaaattcgcctaagcgat
attatctcgggctttgttgatcctaacgatgatcaagatctcgcaccaacagcaacccac
gtgggctctgagttatctgaagaagaattagatgacgaagatggcgacgatgatgaagat
gaagacgaagaagaagacgatagcggcgtagacccagagctagcgcgcgagcgcttctca
gagcttcgtgagcagtacatcaaaactcgtgaagttatcgagaagaaaggccgctctcac
gccgattcccgtacccaaatcaacgctttaagcgacgttttcaaagagttccgcttagtt
cctaagcagttcgaccgcatggttaagaacatgcgtgcgatgatggacaaggtgcgtatc
caagaacgtcttgttatgaagttctgcgttgttaatgcaaaaatgcctaagaaagacttt
atcaaagcatttgcgggcaatgaaacctctactgcatggttgcatgaagctgttaaatca
ggtgcgccttatgccgctgatcttgcagttaaccaagaagagattgaacgctgcattagt
aagatgaaccaagtagagcaagaaactggcttggttatcgcagatattaaagacattaac
cgtcgtatgtcgattggtgaagcgaaagcccgtcgcgcgaaaaaagaaatggttgaagcc
aaccttcgtcttgtaatctcaattgcgaagaagtacaccaaccgcggtctgcagttcctt
gaccttattcaagagggtaacattggcctaatgaaggcggtggacaagtttgaatatcgt
cgtggttataagttctcgacttatgcaacatggtggattcgtcaggctattactcgctcg
attgcagaccaggcgcgcacaattcgtattcctgtgcacatgattgagacgattaacaag
ctaaaccgtatctctcgtcagatgcttcaggaaatgggtcgtgagcctacacctgaagag
ttgtccgagcgcatgctgatgcctgaagacaaaattcgtaaggtacttaagattgctaaa
gagccaatttcgatggaaacccctatcggtgatgatgaagattcacatcttggcgacttt
atcgaggatagcactattattcagcccctcgattcagcaactggcggtagcttaaaaggc
gcaacacaagaagttttggcaggtctaacagcccgtgaagcaaaagtactgcgtatgcgt
ttcggtatcgatatgaataccgaccacacgcttgaggaagtaggcaaacagtttgacgtt
acccgtgagcgtattcgtcagattgaagctaaagcacttcgcaagcttcgccaccctagc
cgttctgagcagctacgcagtttcttagacgaatag
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