Alteromonas mediterranea U7: I876_09105
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Entry
I876_09105 CDS
T02721
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amae
Alteromonas mediterranea U7
Pathway
amae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I876_09105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amae03019
]
I876_09105
03016 Transfer RNA biogenesis [BR:
amae03016
]
I876_09105
Enzymes [BR:
amae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
I876_09105
Messenger RNA biogenesis [BR:
amae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I876_09105
Transfer RNA biogenesis [BR:
amae03016
]
Prokaryotic type
tRNA degradation factors
I876_09105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AGP89684
LinkDB
All DBs
Position
2082505..2084616
Genome browser
AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTV
NYQEKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSAN
PDIPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESQLDLVVAG
TEGAVLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTA
LKDKVKALAEAEMTAAYQISDKLERKDAVTAATDKALEAILAEDEEQDKKEVLDLLHDLE
SDVVRSRILSGAPRIDGREPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERD
AQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDI
LGDEDHLGDMDFKVAGTTDGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAI
GGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKVFATE
RAKADIAIGKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNK
VTDYLKEGEMVDVKVMEIDRQNRVRLSIKELLEKPAPKSDDAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctattactaaatcatttcagtatggacagcatactgtaactctagagacgggt
gtaattgctcgtcaggcgacagctgcggttcttgcgagcatggacgacacgtctgtactg
gtaacagtagttggtaaaaaagaagccaagccagatcaagacttcttccctctaacagtt
aactaccaagaaaaagcatacgctgcgggtaaaatcccaggtggtttcttcaagcgtgaa
ggtcgtccatctgaaggcgaaacattgactgcgcgtcttatcgaccgcccaattcgccca
ttattcccagaaggcttcaaaaacgaagtacaagttgttgttactgtaatgtctgctaac
ccagatatccctacagacatcatctctatgattggtacttctgcagcccttgctatctct
ggtattccattcaacggcccaattggtgcggcgcgtgttggtttcagcaacggcgaatac
attctaaatacacgcgcagaagagcaagctgaaagccagcttgaccttgttgttgcgggt
actgaaggtgcagtacttatggttgaatcagaagctgacgtgctttctgaagaaactatg
ctaggtgcggtaatgttcggtcacgagcaacttcaaaccgtggttagcgcggttaacgaa
tttgctgctgaagttggcactgagaagtgggactgggcaccagaagcagaaaacactgca
cttaaagataaagttaaagcactagctgaagctgaaatgacagcggcttaccagatttct
gacaagttagagcgtaaagacgcggtaactgcagcaactgacaaagcactagaagctatc
cttgctgaagacgaagaacaagacaagaaagaagtactagaccttcttcacgatcttgag
tctgacgtagtacgttcacgcatcctttctggcgcgccacgtatcgacggtcgtgagcct
gcaatgattcgtgctctagacgtagcaactggtattcttcctcgtactcacggttctgca
ctatttacccgtggtgaaacgcaggcaattgttgctgctactttaggtacagagcgtgat
gcacagatgattgacgagcttcaaggtaagcgcgacagccgtttcatgcttcactacaac
ttccctccatactgtgttggtgaaaccggtatgattggctcgcctaagcgtcgtgaaatt
ggtcacggtcgtctagcgaagcgtggtattcaagcagtaatgccaagtgaagaagaattc
ccgtacgtagtacgtgtggtttctgaaatcacagaatcaaacggttcatcttcaatggcg
tcggtatgtggtacttcactagcgcttatggatgcgggtgttccaattaaagcgtctgtt
gcgggtatcgcaatgggcctagttaagagtgacgacaactttgttgtactttcagacatc
cttggtgacgaagatcatcttggcgacatggactttaaagtagcgggtactaccgacggt
attactgcacttcaaatggacattaagattgaaggtattactaaagaaatcatgcaaatt
gcgcttaaacaagcaaaagaagcacgtttgcacattcttaacgtaatggacgaagccatt
ggcggtcaccgtgaagagctaagtgaatttgctccacgcatttacacaatgaagattgac
caagacaagattcgtgacgttatcggtaaaggcggcgcaatgatccgccaaattactgaa
gagtctgacactaacatcgagattgaagacgacggtactatcaaagtcttcgcgacagag
cgtgcgaaagcagacatcgctattggcaagattgagcaagtaaccgctgaaattgaagtt
ggtaagacttacaacggtaagattacacgtattgtagacttcggtgcgttcgtagaagta
cttccaggtaaagaaggtcttgttcacatttcacaaatcgctcacgagcgtgtgaacaag
gttactgactaccttaaagaaggtgaaatggttgacgttaaggttatggaaatcgaccgc
cagaaccgtgtacgtttaagcattaaagagcttctagaaaagcctgcgcctaagtctgac
gacgcagagtaa
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