Alteromonas mediterranea MED64: I533_10200
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Entry
I533_10200 CDS
T02958
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I533_10200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_10200
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I533_10200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
UVR
HHH
HHH_5
GIY-YIG
HHH_2
LOB
GIY_YIG_2
GIY_YIG_domain
Motif
Other DBs
NCBI-ProteinID:
AGP82010
LinkDB
All DBs
Position
complement(2291358..2293112)
Genome browser
AA seq
584 aa
AA seq
DB search
MYNSQGEVIYVGKAKNLKKRVSSYFRTHLDNAKTRSLVSQIADMDVTVVNSETEAFLLEN
NFIKKYKPRYNVVMRDDKSYPFIFLSDHEHPRLSFHRGPQKKKGEYFGPYPSAWSVRESL
RSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYKEQVNFARLFLKGK
NQQVIGELVEKMEKASEALNFEAAARYRDQINALRKVQERQWVAGTQDEMDVFGFALKGN
MACIQVMFIREGQLLGSKAFFPKVPNIADEQEVFESFFLQFYLAGNKVIPKQIVLSNSLS
DEEAIAKVLASEAGHKVHFFKGAREEKRKYLQLAQSNAQTALDAQYSQQKSVFARYLDLE
GALEVDTPIQRMECFDISHTSGQQTVASCVVFNREGPLKSDYRRYNIEGITPGDDYAAMA
QALKRRYKSVKEVQKIPDLLLIDGGKGQLAQAEAFFEEWPHDKKPMLLGVAKGTTRKPGL
ETLILAGSHEVLPMDSHSPGLHLVQHIRDESHRFAITGHRNRRQKVKTTSSLESIPGIGA
KRRQTLLKFMGGLQGLKKASKDEIASVPGISQELADTIYDHLHQ
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtacaatagccagggtgaggttatttatgtaggaaaagcgaaaaacctaaaaaagcgt
gtatccagttatttccgtacccatttggataatgccaaaacccgttcgctcgtcagtcag
atagcggacatggatgtcacggtggtaaacagtgagaccgaagcgttcttactggaaaat
aatttcattaagaaatacaaaccgcgttacaacgtggttatgcgtgacgacaaatcatac
ccttttatctttttatctgaccacgaacatccacggctgtcatttcaccgtggccctcaa
aagaaaaaaggggagtattttggcccatatccaagcgcatggtcggtacgcgaaagttta
cgctctatgcagcgaatatttcctgttcgtcagtgcgaagatagctattatcgcgcgcgc
agtcggccttgtcttcaatatcaaatgcagcgctgcagtgccccttgcgttgaagggtac
gtcagcgacgaagaatataaagaacaggttaactttgcccgcttgtttctaaaaggcaaa
aatcaacaagtgattggcgagctggtggagaagatggagaaggctagcgaagcgttaaac
tttgaagccgcggcccgctatcgagaccaaataaatgcgctaagaaaagtacaagagcga
caatgggttgccggtactcaagacgaaatggatgtgtttggttttgcgcttaaaggcaat
atggcctgtatccaagttatgtttattcgagaaggacaactgttaggcagtaaagctttt
tttcctaaagtgccgaatatcgccgatgaacaagaagtttttgagtctttctttcttcag
ttctaccttgcaggaaacaaggttatacccaagcaaatagtgctaagcaattcattaagc
gatgaagaggcgattgccaaagtgttagccagtgaggctggccacaaggtccatttcttt
aaaggggcgagggaagagaagcgtaaatatctgcagcttgcgcaatcaaatgcacaaact
gcgttagatgcacagtatagtcagcaaaagtctgtatttgcccgataccttgacctagaa
ggcgcgctagaagtcgatacgcctattcagcgtatggagtgttttgatatatcgcacacc
tctgggcaacaaacggttgcttcttgcgtggtgttcaatcgcgaaggcccccttaaaagc
gactatcgacgttacaatatagaagggataacccctggcgatgattatgctgcgatggcc
caggctctgaaacgtcggtataaatcggtaaaagaggtgcaaaaaatccctgaccttctt
cttattgatggtggtaaagggcaactggcacaagccgaagcgttttttgaagaatggcca
cacgacaaaaaacccatgctattgggtgtagctaaaggcaccacgcgtaaacccggctta
gaaaccctaattttagcgggaagtcatgaagtgctgccaatggacagtcattcgcccggg
cttcaccttgttcaacacattcgcgacgaatctcaccgctttgccataacagggcaccgt
aaccgtcgccagaaggtgaaaacaacgtcgagcttagaaagcattccgggtataggcgct
aaacgaagacaaaccttgcttaagtttatgggtggccttcagggtctaaaaaaagccagt
aaggatgaaattgcaagtgtacccggtatcagccaggaactggccgatacaatttacgac
cacctccatcaataa
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