Alteromonas mediterranea U4: I607_03615
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Entry
I607_03615 CDS
T02720
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03410
Base excision repair
amal03430
Mismatch repair
amal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I607_03615
03430 Mismatch repair
I607_03615
03440 Homologous recombination
I607_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_03615
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
I607_03615
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
I607_03615
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I607_03615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
AGP84533
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Position
814510..816231
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AA seq
573 aa
AA seq
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MILPIVRREISGASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAALI
LATAIEQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVD
EAAKQGADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGEVLPPADAIVNPNQPGCE
FPSKNLAGVGVAFYIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKN
NRILVHQGLQRIRAGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQG
IACLLEDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYRE
DFHQGVIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVI
EKFGGHAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAH
LLRQAGPFGQGFESPLFDGEFSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWPN
AMVKRVHIAYRLDINVFRGQETVQLIVEQIEAL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgattttgcctattgttcgccgcgagataagcggtgcatccttaagttccgacttacac
cccgttattgatagaatttaccgaggtcgtaatattgcgaatatcgatgatttggaaaac
gggcttagagggcttactcactttaacgcgctaaaaggaatgcctgaggccgcactaatt
cttgccacagcgatagaacaaaataaacgcattatcattgttggcgattttgatgccgac
ggtgcaaccagtacgtcggtttgtattttggcgctacgggcaatgggctttgataacgta
gattttcttgtgcctaaccgattcgactttgggtacgggctcagcgttcctattgttgat
gaagctgccaagcagggcgcagatattattgttaccgtggataacggcatatcgtgcatt
gacggtgttacccatgcaaaagggttaggaatacaagttgtcgttaccgatcaccacttg
ccaggcgaagtgcttccgccagctgatgcgatagtgaatcctaaccaacctgggtgcgag
ttcccttctaaaaatttggcaggggtgggcgttgctttttacatcatgcttgcgttaaaa
gccaagctacagcagcaagggtattttgaaaaagctggcatagctccacctaacttggca
tcactgcttgatatcgttgctgtaggtacggtggccgatgttgtcgtgttggataaaaat
aaccgaatattagtacatcaaggccttcaacgtattcgtgcagggcagtgtaggcctggt
attaaagcgctggtggaagtggcaaatagggattgtgcccacttaacgtcaacagattta
ggttttgtggtaggcccacgacttaatgccgctggacgcttagatgatatgtctcaaggc
attgcgtgtttattagaagatgacacgattcaagcgcgtatgattgccgccgaactcgat
gcactcaacaaagagcgacgagaaatagaaacgggaatgaaagcgcaggcagaaatggcc
ctagaacaaatggtacttgatgaaggcgatatgccaagcgcactggtggtctatcgcgaa
gactttcaccaaggtgttattggtattgtcgctgggcgtttaaaagagaaataccttaag
cccgtgattgcctttgcgcaccaagatgaccttattattaaaggttctgctcgctctatt
cccggcgttcatattcgagacgtactcgatgaagttaatacacgataccctggcgttatc
gagaagttcggtggccatgcgatggcggcgggtcttagcctgccggtagctaaactgcgt
gactttgagcgtgcgtttatcgacattgccggtaaacatttagctaaattagatggaaac
catgccctgctttctgatggtgacttatccgccagtgaactgtgcttacccttcgcccat
ttgcttcgccaagcgggcccgttcggacaaggttttgagtcaccgctttttgacggtgaa
ttctcgcttcttgaccagcgcttagttgggcaaaaacaccttaagatggtgttaaaaggc
gacggggctaatgaagtcgatgctatagcgtttaatgtggacttgaaagcgtggcctaat
gccatggttaagcgtgtgcatatagcttatcgccttgatattaacgtattcagaggacaa
gaaacggttcagcttattgttgagcaaatagaagccctgtag
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