Amycolatopsis mediterranei U32: AMED_0838
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Entry
AMED_0838 CDS
T01269
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMED_0838 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_0838 (xthA)
Enzymes [BR:
amd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AMED_0838 (xthA)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AMED_0838 (xthA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ADJ42658
UniProt:
A0A0H3CWG7
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Position
895782..896618
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AA seq
278 aa
AA seq
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MHWVLTVSTVNVNGLRAAAKKGFVEWLAATKADVVACQEVRAEASQLPAAVVGPDGWFSV
HAPSAVKGRNGVAVYSRVEPEEVRIGFGEPEFEDSGRYLEVHLPNVVVASLYLPSGDVGT
ERQDEKERFMAAFLPYLAELRAKAAAAGREAVVVGDWNIAYDTVDLKNWRGNRKNSGFLP
EERAWLGRVYTEAGYTDVQRRLDPEGPGPYTWWSYRGQAFDNDSGWRIDCQLATPGLAEK
VVDVVVERAAAYDQRWSDHAPVTATYDIDFPREPAQEV
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
gtgcactgggtgctgactgtctccaccgtgaacgtcaacggccttcgcgccgccgccaaa
aagggcttcgtcgagtggcttgccgccacgaaagccgacgtggtcgcctgccaggaggtg
cgggccgaagccagtcagctgcccgccgccgttgtcggccccgatgggtggttctccgtg
cacgcgccttcggccgtcaaggggcgcaatggcgttgccgtctacagccgggttgagccc
gaagaggtgcggatcggcttcggagagcccgaattcgaggacagcgggcggtacctcgag
gtgcacctgccgaacgtcgtcgttgcgagcctttacctgcccagcggggacgtcggcacc
gaacggcaggacgagaaggaacggttcatggccgcgttcctgccctacctcgccgaactg
cgggcgaaggccgccgcggcggggcgggaggccgtggtcgtcggggactggaacatcgcc
tacgacaccgtcgatctcaagaactggcgcggcaaccgcaagaactccggcttcctgccc
gaagaacgcgcctggctcggccgcgtctacaccgaggccggctacaccgacgtccagcgc
cggctcgaccccgaaggccccggcccgtacacctggtggtcctaccgcggccaggccttc
gacaacgactccggctggcgcatcgactgtcagctcgcgacgcccgggctcgccgagaag
gtcgtcgacgtcgtggtcgaacgggccgccgcctacgaccagcgctggtccgaccacgcg
ccggtcaccgcgacctacgacatcgactttccccgcgagccggcccaagaggtgtag
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