Amycolatopsis mediterranei U32: AMED_2541
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Entry
AMED_2541 CDS
T01269
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amd03021
]
AMED_2541 (rpoE)
Transcription machinery [BR:
amd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMED_2541 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
HTH_38
Sigma70_ECF
HTH_Tnp_ISL3
HTH_23
HTH_Tnp_1
DUF1804
DUF2089
DUF742
HTH_30
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ADJ44336
UniProt:
A0A0H3D2C2
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All DBs
Position
2706699..2707259
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AA seq
186 aa
AA seq
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MGRHTRALRSIGDQDAVVEPGDGHDDLAKALYQEFGGSLMAFALRLTGHDRQWAEDVVQE
TLIKAWRNADKLDRQPEMLRAWLFTVARRTVIDGWRSRSVRPQELEEIESDAIAVSDESD
RTLAAMIVYEALQGLSPEQREAIQQTYLRDRTVNEVAATLGVPPGTVKSRIHHAVRALRR
ALRERG
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
gtgggacggcacacccgagcgctgagatccatcggagatcaggatgccgtcgtcgagccc
ggcgacggccacgacgatctggcgaaggcgctttaccaggagttcggcgggtccctgatg
gcgttcgcactgcggctgaccggccacgaccggcagtgggccgaagacgtcgtgcaggag
accctgatcaaggcgtggcggaacgccgacaagctcgaccgccagcctgagatgctgcgt
gcctggttgttcacggtggcccggcgtaccgtcatcgacggctggcgcagccgcagcgtc
cggccccaggagctcgaggagatcgaatccgacgcgatcgcggtgtccgacgaatcggac
cggacgctcgccgcgatgatcgtttacgaggcgctgcagggactttcgcccgagcagcgg
gaggccatccagcagacctacctgcgcgatcggaccgtgaacgaggtcgcggcgaccctc
ggcgtgccgcccggcaccgtcaaatcccgcatccaccacgccgtccgcgcgctgcgccgg
gccttgcgcgagcgggggtga
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