KEGG   Amycolatopsis mediterranei U32: AMED_4197Help
Entry
AMED_4197         CDS       T01269                                 

Gene name
lig
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMED_4197 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amd03400]
    AMED_4197 (lig)
Enzymes [BR:amd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMED_4197 (lig)
DNA repair and recombination proteins [BR:amd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMED_4197 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-GeneID: 9438384
NCBI-ProteinID: YP_003766374
UniProt: A0A0H3D6K8
LinkDB All DBs
Position
4607745..4608644
Genome map
AA seq 299 aa AA seqDB search
MQVGERRLTLSNLEKVLYPRPGFTKGEVLDYYTRIAPVLLPHVRDRAMTFVRFPEGVTGT
SFFEKDVSRHAPDWVRTARLTVGGRGKEPEIVAYPLINDLPELVWAANLAALELHVHQWT
VGPGDERSTPDRLVFDLDPGPGATVVDCCRVAERLHDVLVEDGLTPVAKTSGSKGMQLYA
GIVTTDGGEPSQYAKALAERLAAETPDLVVARMTKNLRPGKVFIDWSQNNPFKTTVAPYS
LRGRDEPTVSAPVTWDEVRACRHVTHLRFTAGEVLARVEDIGDLFADLERTRVPILAFG
NT seq 900 nt NT seq  +upstreamnt  +downstreamnt
gtgcaggtcggcgagcgccggctgacgctgtcgaacctcgagaaggtgctctacccgcgg
cccggcttcaccaagggcgaggtgctcgactactacacgcggatcgcgccggttttgctg
ccgcacgtgcgcgaccgggcgatgacgttcgtgcggttccccgagggcgtcaccggcacc
tcgttcttcgagaaggacgtctcccggcacgcgccggactgggtccgcaccgcgcgcctg
accgtcggcggccgcggcaaggagcccgagatcgtcgcgtacccgctgatcaacgacctg
cccgagctcgtctgggcggccaacctcgccgccctcgaactgcacgtccaccagtggacc
gtcgggcccggcgacgagcgcagcaccccggaccggctggtgttcgacctcgacccggga
cccggcgcgacggttgtcgactgctgccgggtcgccgaacggctccacgacgtcctcgtc
gaggacgggctcaccccggttgcgaagaccagcggctccaaaggcatgcagctgtacgcg
ggcatcgtgacgacggacggcggtgagccgtcgcagtacgccaaggcgctggccgagcgg
ctcgccgccgagacgccggacctcgtcgtggcgcggatgacgaagaacctgcgcccgggc
aaggtcttcatcgactggagccagaacaacccgttcaagaccacggtggcgccgtactcg
ctgcgcgggcgcgacgagccgacggtctcggctccggtcacgtgggacgaggtccgcgct
tgccggcacgtcacgcacctcaggttcaccgcgggcgaagtcctggcgcgcgtcgaggac
atcggagatctgttcgccgatctggaacgcacccgcgtcccgattttggcgttcggctga

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