Astyanax mexicanus (Mexican tetra): 103021456
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Entry
103021456 CDS
T05042
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1
KO
K11101
patched 2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
103021456
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GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
103021456
NCBI-ProteinID:
XP_007235418
Ensembl:
ENSAMXG00000009387
UniProt:
A0A8B9LXV7
LinkDB
All DBs
Position
16:complement(95083..123672)
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AA seq
1434 aa
AA seq
DB search
MAAEPRDPPPDYERAPPSNDPRQPRADTRRHAALALNHFNKGKAAGQRAPVWIRARFQAL
LFTLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVSRELRYTKEK
QGEETVFTSQMLIQTPKQEGTNILTQEALLLHLEAALSASKVQVSLYGKSWDLNKICFKS
GVPIIENVMIERMIDKLFPCMIVTPLDCFWEGSKLQGGSAYLPGMPDIQWMNLDPLKLME
QLSQFTSLEGFREMLDKAQVGHAYMNRPCLDPNDPDCPHSAPNKDLRQSPEIAEELQGGC
SGFSKKFMHWQEELILGERAKNSQGSLQSAEALQTMFLLMSPKQLYEHFKDDYEIHDINW
NEDKATAILESWQRKFVEVVHSSIPQNSSSNVYAFSTTTLNDIMKSFSDVSVIRVAGGYL
LMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPFLA
LGIGVDDMFLLAHSFTQAGSNIPFKERTGDCLRRTGTSVALTSINNMIAFFMAALVPIPA
LRAFSLQAAVVVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSSRVIQIQPQE
FSDSNDNHPPPRSHAPATPTFPVSTTITTSTHITTTVQAFTQCDAAGQHIVTILPPTSQI
STSPGPPPPSSTSSTDPYGSRLFTPSSSTRDLLSQAEESRSSECAPLPFLHWDLARFARN
RYAPLLLKPETKTAVVVAFVALLGLSLYGTTMVRDGLYLTDIVPRDTKEYDFISAQFKYF
SFYNMYLVTMDGFDYARSQRELLQLHNAFNSVKYVVRDSDQKLPRMWLHYFQDWLRGLQV
SFDADWESGRITPDSFRNGTEDGALAYKLLIQTGSKKELFNYSQLTSRRLVDDDGMIPPE
VFYIYLTVWVSNDPLGYAASQANFYPHPHEWIHDKYDTTGENLRIPAAEPLEFAQFPFYL
NGLRQASDFIEAIESVRSVCEEFMRKGIQNYPNGYPFLFWEQYIGLRHWFLLSISVVLAC
TFLVCAVLLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEFTV
HVALGFLTAIGDRNTRSVAALEHMFAPVMDGAISTFLGVLMLAGSEFDFIMRYFFAVLAI
LTLLGILNGLVLLPVLLSIMGPPAEGSNGSDGNCLSSSSPELTPPTMNHHGYYAGHVPRG
RRQAFTEVSDSEYYSETTTSSGIGEEDHKHYDRSAYITPPPQPPTSHILLEASKNPTFPK
LTVVKPFSERSAAGCQMDQAGESMQNAVNSISSQITRWDGKQEYQGSRTQYLPSDRTHCP
GRTTHCGPSRGPQQNRTTAPGHAANTVTMVTATASVTVAVHPSLPGSYQGYMHEGFEDSE
SDSFKDIKRTSRTYAAQSSHRDSLEIHDLESLEKNQHQANQGLGGSRIQAAKDC
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggagccgcgagaccctcccccggactacgagcgcgcgcctccgtctaacgac
ccacggcagccccgcgcggacacccgccgccacgccgcgctcgcactcaaccacttcaac
aaggggaaagctgcggggcagagagcgccggtgtggatccgggccaggttccaggctctg
ctctttactctgggttgccatatccagcgacactgcggaaaagtactgttcattgggctg
ctggtgttcggcgctctatcggtcggactgcgagtcgccgccatcgagacggatatcgag
cagctgtgggtggaagccggcagtcgagtgagtcgggagctgagatatacgaaggagaag
cagggcgaggagacggtgttcacctctcagatgctcattcagacgcccaaacaggaagga
accaatattcttacccaggaggctttgctgctccacctggaggcggcgctgtcggccagt
aaagtccaggtgtctctttatggaaaatcctgggacctcaacaaaatctgcttcaagtct
ggagtccctattatcgagaacgtcatgatcgaaaggatgatcgataagcttttcccctgt
atgatcgtcactccgctggactgtttctgggagggatctaaactgcagggaggatctgcg
tatttaccggggatgcctgatattcagtggatgaatctggaccctctgaagctgatggag
cagctgagccagttcacctctctggagggcttcagggagatgctggataaagctcaggtg
ggccacgcctacatgaaccgaccctgtctggacccgaacgacccagactgcccccacagc
gcccccaacaaagacctgcggcagagtcctgaaatcgctgaggagctgcagggcggctgc
agcggcttctctaagaagttcatgcactggcaggaagagctgatcctgggagaacgagca
aaaaactcacagggatctttacaaagcgctgaggccctgcagaccatgtttctcctcatg
agcccgaagcagctgtacgaacactttaaagacgactacgagatccacgacatcaactgg
aacgaggacaaggccaccgccatcctggagtcctggcagaggaagtttgtggaggtggtc
cacagcagcattcctcagaactcctcctccaacgtctacgccttctccaccaccaccctc
aacgacatcatgaagtctttctctgacgtcagcgtcatcagggtggccggcggttacctg
ctcatgctggcgtacgcctgtgttacgatgctgcgctgggactgtgctaagagtcagggt
gcggttggtctggccggggtcctgctggtggcgctctccgttgctgccggtttgggactg
tgttctcttctcgggctttctttcaatgctgccaccacacaggtgctgccgttcctggcg
ttggggatcggggtggacgacatgtttcttctggctcattccttcacccaggccggatcc
aacatccccttcaaggagaggactggtgactgtttgaggagaaccggcaccagcgtggct
ctcacctccattaacaacatgattgcctttttcatggcggcactggtgcccattcccgcc
ctgagggcgttctctctgcaggctgctgtcgtggtggtgtttaattttgcaatggttctg
ctcatcttccctgccatcctcagtctggacttgcacaggcgtgaggacaaaaggctggac
attctgtgctgcttttacagcccctgctcctctcgagtgatccagatccagcctcaggag
ttctccgactctaatgacaaccacccaccgcctcgctcccacgccccggccacgcccacc
ttccccgtctccaccaccatcaccaccagcacgcacatcaccaccacggtgcaggccttc
acgcagtgcgacgctgccggccagcacatcgtcaccatcctgcccccgacctcacagatc
tccaccagccctggacccccgcccccctcatccacctcctccaccgacccgtatggctcg
cgcctcttcaccccctccagctccacccgggacctgttgtcacaggccgaggagtcccgc
tcgtccgagtgcgcccccctgcccttccttcactgggacctggctcgcttcgcccggaac
aggtacgcccccctgctgctgaagcctgagactaagacggcagtagtggtggcgttcgtg
gctctgcttggcctcagcctctacggcaccaccatggtccgcgacgggctctacctaacg
gacatagtgccccgagacacaaaggagtacgattttatctcagcgcagtttaaatacttc
tccttctacaacatgtacttggtcactatggacggcttcgactatgcgcgctcccagcgg
gaactgctgcagctccacaatgccttcaactccgtcaagtacgtggtgagggacagcgat
cagaagctgccgcgcatgtggctccactacttccaggactggctgcgaggacttcaggta
tcttttgatgctgactgggaatcaggcaggatcacccctgacagcttccgcaacggcacc
gaggacggagctctagcctacaaactgctcattcagaccggctccaagaaagagctcttc
aactacagccagctgacgtcccggcgcctggtggacgatgatggcatgatccctcccgag
gtcttctacatctatctgaccgtgtgggtcagtaacgacccgctgggttacgccgcctct
caggctaacttctacccccaccctcacgagtggattcacgacaagtacgacaccacaggc
gagaatctgcgaattcctgccgctgagcctttggaatttgcccagttccccttctaccta
aacggtctccgccaagcgtctgacttcatcgaggccattgagagcgttcgctccgtttgc
gaggagttcatgcgcaagggcatccagaactaccctaacggctacccgtttctcttctgg
gaacagtacatcggcctgcgccactggttcctgctgtccatcagcgtggtgctcgcctgc
accttcttggtgtgcgccgtcctgctgctcaatccgtggactgcaggcatcatagttttt
atcttggcgatgatgacagtagagttgtttggcatcatgggacttattggtatcaagctg
agtgccatccctgtggttatccttattgcctctgttggaattggagtggagttcacagta
cacgttgcactgggtttcttgaccgccattggggacaggaacacgcgttccgttgcggct
ctggagcacatgtttgctccggtgatggacggcgctatttccacttttcttggggtgctc
atgcttgccgggtccgagtttgacttcattatgaggtacttttttgcagttctggccatc
ctgaccttgttgggaatcctgaacggcttggtgctgctgccggttctcctgtctatcatg
ggtcctccagcagagggcagcaatggcagcgacggcaactgcctgtccagctcctcaccc
gagctcacgcctccaacaatgaaccaccacggatactacgcaggacacgtccccagagga
cgacggcaggcctttactgaggtctcggattctgagtactactctgagacaaccacctca
tctgggattggggaagaagaccacaagcactacgacaggagcgcatacataactccaccc
ccccaaccccccacctcccacatcctgctggaggccagcaagaaccctacatttcctaaa
cttacagtagtgaaaccgttcagcgaaaggtcggccgcaggttgtcagatggatcaagcc
ggcgagtcgatgcagaacgcagtgaactccattagttcacagatcacgcggtgggacggc
aagcaagagtaccaagggtcaaggactcagtatttacccagcgataggacccactgtcct
gggaggactactcactgtggccccagtagagggccacagcagaacaggactacagcgccg
ggccatgccgccaacacggtcactatggtcacggccaccgcctcggtgacggtggcggtt
caccccagtctgccggggtcctatcagggttacatgcacgagggctttgaggacagcgag
tcggactctttcaaggacattaagaggacttcccgaacttacgctgctcagtcgtcccac
agagactctttggaaattcatgatttggaatcgctagaaaagaaccagcatcaagctaac
cagggtctaggtggttcacggattcaagccgccaaagattgctag
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