Astyanax mexicanus (Mexican tetra): 103037407
Help
Entry
103037407 CDS
T05042
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
amex03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103037407 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103037407 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103037407 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103037407 (smarcb1)
03036 Chromosome and associated proteins [BR:
amex03036
]
103037407 (smarcb1)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103037407 (smarcb1)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103037407 (smarcb1)
SWI/SNF complex
103037407 (smarcb1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103037407 (smarcb1)
PBAF complex
103037407 (smarcb1)
SWI/SNF complex
103037407 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
103037407
NCBI-ProteinID:
XP_007252845
Ensembl:
ENSAMXG00000016182
UniProt:
A0A8B9JUG8
A0A3B1IDQ4
LinkDB
All DBs
Position
14:complement(36939523..36952134)
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQSEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacgttcggtcagaaaccgattaaattccagctggagcaggatgga
gatttctatatgatcggttcagaggtaggaaactacctgcgtatgttcagagggtcactg
tacaagaggtacccatccttgtggcgacggcttgcgtcagtggaggagaggaaaaagatc
gtagcatcatcacacgccaccagtgtgactctgctgaaagcgtctgagtgcgaggagatc
tttgaggggaacgatgagaaatacaaggcagtgtccatcagcacggaacctccagcctat
ctcagagagcagaaagcgaagaggaacagccaatgggttccaaccctccccaacagctct
caccacctggatgctgtgccttgctccactacaatcaacagaaatcgcatgggacgggac
aagaagaggacgtttcccctgtgttttgatgaccatgacccagcggtgatccacgaaaac
gcctctcagtcagaagtgctggttcctatcagattggacatggagatagatggccagaag
cttagagacgctttcacctggaacatgaatgagaaactgatgaccccagagatgttcgca
gagatcctgtgtgatgatctggacctgaaccccctgactttcgtcccagccatcgcttct
gccattcgacagcaaatagagtcctaccccactgacagcatactggacgagcagactgac
cagagggtcatcatcaagctaaacatccatgtggggaacatttccctggtggaccagttt
gagtgggacatgtcagagaaggagaattctcctgaaacctttgctctgaagctgtgctct
gagctggggctcggaggagaattcgtcaccaccatcgcctacagcatccgcggccagctc
agctggcatcagaggacgtacgccttcaggtctgatttcagtgagaaccccctgccaacg
gtagagatcgctattcggaacacaggcgatgccgaccagtggtgccccctgctggagacc
ctgacagacgctgagatggagaagaagatcagagatcaggacagaaacacgaggcgcatg
cgacgacttgccaacaccgcccccgcctggtag
DBGET
integrated database retrieval system
