KEGG   Astyanax mexicanus (Mexican tetra): 103045033Help
Entry
103045033         CDS       T05042                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:amex01009]
    103045033 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103045033 (hdac6)
   04131 Membrane trafficking [BR:amex04131]
    103045033 (hdac6)
   03036 Chromosome and associated proteins [BR:amex03036]
    103045033 (hdac6)
Enzymes [BR:amex01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103045033 (hdac6)
Protein phosphatases and associated proteins [BR:amex01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103045033 (hdac6)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     103045033 (hdac6)
Membrane trafficking [BR:amex04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    103045033 (hdac6)
Chromosome and associated proteins [BR:amex03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     103045033 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 103045033
NCBI-ProteinID: XP_022526587
Ensembl: ENSAMXG00000017118
LinkDB All DBs
Position
6
AA seq 1112 aa AA seqDB search
MESASDPTPPRAHKGSSRSPKKPQQNSAKRENSKPNHKQSLQDARRKGRMDRGKAEEEII
NKLKNIDLRCKPKATGTGLVYSEAFTHHRCLWDTSHPECPERVIAVVELMKKEGLLSRCV
QVETRAASEEEISLVHTKEYIDRMRSTQKMTEEEMKLVSDGYDSVYLHPDTFSCACLAVG
SVLQLVDKVMTSELRNGFSVSRPPGHHAQTELMNGYCMFNNLAVAARYAQKQHGVQRVLI
VDWDVHHGQGIQYIFQDDPNVLYFSVHRYEDGSFWPHLPESDSSAVGSGLGEGYNINLPW
NKTGMQDGDYVAAFQRLLLPVAYEFQPQLVLVAAGFDSVVGDPQGGEMSASPQCFSVLTH
MLMGLAQGRIVLALEGGYNLQATAEGACASLRSLLGDPCPHLPCPGSPSESALNSISKTV
SDLYPFWTSLQILEGGALSEAEPLPSSVCAEMNLESSLRSTGLVYDQRMMEHHNMWDSDH
PERPQRIFRIFSRHEELGFVDRCQRIPARLATEEELALCHGLEHIATIKSTEQMKPRDLH
RLGDEYNSIYISQESYKSALLAAGSCFNSAQAILTGQVRNGVAIVRPPGHHAERDKACGF
CFFNTAALTARYAQSITHSALRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGLFF
PSSEDANYDKVGQGKGAGYNVNIPWNKATMGDPEYLAAFHNIVMPIAREFAPELVLVSAG
FDAARGDPLGRYQVTPEGYAHLTHQLLSLAAGRVLVILEGGYNLNSISESMAMCTSMLLG
DAPPMLPDLPPPHASAAVTINNVLRAHAPYWRSLRIQIPESLRMSLPSPQPKTKRSSTGR
SKKSPRQFTPAQSPSQQQQSSPVITSPASPAAAQEDSGLDELTQGLHSLDLSSSTSANSS
PTSIPVGGARPKVKPSPQKDVTSALEESPVKVIESDRAEPIVKAESTPIKEEKQSFSEPA
EADAVAMGDQDSGVLEGACGFTQKSVFELVCGAVDMGGDTMYVVDPLAWCPHLESVRPLP
VGGIDVFRPCEECGADSENWVCLCCYKVLCGRFVKEHMVTHGQVSGHPMVLSFADLSVWC
YPCESYVHNKVLHEIKNAAHVAKFGEEIPPIN
NT seq 3339 nt NT seq  +upstreamnt  +downstreamnt
atggaatctgcatcagatcccactccaccaagagcacataaaggctcttctcgttctcca
aaaaaacctcagcaaaactctgccaaaagagaaaacagcaaacccaaccacaagcagagt
ctccaggacgccaggagaaagggcagaatggaccgagggaaagcagaagaggagataatc
aataagctcaaaaacattgatttgcgttgtaagcctaaagcaactggaacaggcctggtt
tactctgaagcttttactcaccatcgctgcctctgggacaccagccatccagagtgtcca
gagagagtgatcgctgtagtggagttaatgaaaaaagagggtctgctctctcggtgtgtg
caggtggagaccagagctgcatcagaggaggagatttcccttgttcacacaaaggagtat
attgatcgaatgagatccacgcaaaagatgacagaagaggagatgaagttagtctcggat
ggctatgactctgtctaccttcaccctgacactttcagctgtgcctgtcttgctgttggc
tctgttctccaactggttgacaaggtgatgacctcagaacttcggaatggcttctctgtg
tccaggcccccgggacaccatgcccagactgagctgatgaatggatactgtatgtttaat
aacctggcagtggcagcgcgctatgcccagaaacagcatggcgtccaacgggttttgatt
gtggactgggatgtgcatcatggtcagggaatacagtacatcttccaggacgatcctaat
gttctttatttctctgttcatcgttacgaggacggttcattctggccccacttgccagag
tcagacagcagtgcagtgggttctgggctgggagaaggttataatatcaacctgccctgg
aacaagacaggcatgcaggatggagactatgttgcagcattccagagacttctcctgcct
gttgcctatgagttccagcctcagcttgtgttggttgctgcaggctttgattctgtggtt
ggtgatccccaaggtggtgagatgagtgcgagtccccagtgtttctctgttctgacccac
atgctgatgggattggctcagggcagaatagtgcttgccttggagggtggctataacctg
caggctacagcagagggtgcctgtgctagtttaagatcgctcctaggtgacccctgtcct
cacctgccctgtccagggtccccaagtgaaagtgctctgaattccatctctaaaactgtc
tcggatttgtatccgttttggaccagtctgcagatcctggaaggaggagctctttctgag
gccgagcccctgccctcctctgtgtgtgctgagatgaatctggagtcctccttacgcagc
actggtcttgtgtatgaccagcgtatgatggagcaccacaacatgtgggacagtgatcat
ccggagcgcccgcagagaatctttcggatcttttcccgccatgaagagttggggtttgtg
gaccgttgccagcggataccagcccgtttagccacagaggaggagcttgcactttgtcat
ggcttggaacacatagccaccataaagagcacagagcagatgaagcccagagacctgcac
aggctgggagatgaatataattccatctatatcagtcaagagagctacaagagtgcgctg
cttgcagctggatcctgctttaactccgctcaggccatcctcactggccaggtgaggaac
ggtgtggctattgttcgtcctcctggtcaccatgctgagagagataaagcatgtggcttc
tgctttttcaacactgctgccctgactgcccgctatgcccagagcattacccacagtgcc
ctgcgggtcctcatccttgactgggatgtgcaccatggcaatggcacccaacatatcttt
gaggaggatgacagtgtcctgtacatctctcttcatcgctacgaagatggtttattcttc
ccttcctcagaggatgctaattatgataaggttggacaagggaagggtgcaggctataat
gtaaacatcccctggaataaagccacgatgggagatccagagtacctggctgctttccac
aatattgtgatgcctattgcacgtgagtttgccccagagctggtgcttgtgtcagctggg
tttgatgcagcacggggtgatccattaggtaggtaccaggtaaccccagaaggctacgcc
cacctaacccaccagttgctgagtttagctgcaggacgagtgttggttatcctggaggga
ggttataacctcaactctatctctgagtccatggccatgtgcaccagcatgctcctagga
gatgcgcccccaatgctgcccgatttgccccctccacacgctagtgctgcagtcaccatc
aacaacgtcctgagagcacatgcaccctactggagatctctcagaatacagattccagag
tctctgcgtatgtccttgccctctcctcagcctaagaccaagcgctcatcaacaggaaga
agcaaaaaatctccacgtcagttcacacctgcacagagtcccagccagcagcagcaaagt
tctccagttataacttcaccagcatcgcctgctgcggcccaggaggactcgggcctggac
gagcttactcagggcctgcactcgctggacctcagctcatctacctcagccaattccagc
ccgacttccatccctgtcggaggtgcccgacccaaagtgaagcctagcccacagaaagac
gtcacatcagccctggaagagtcacctgtgaaagtcatcgagagtgaccgagcggaacct
attgtgaaagcagagtccacacctataaaagaagagaaacagtcgttctcagagccagca
gaagcagatgcggttgccatgggtgaccaggacagcggtgtgctggagggagcctgtggc
ttcacacagaaatcggtctttgagctcgtctgtggcgcagtggacatgggcggggacaca
atgtacgtggtggacccgttggcatggtgcccacacctggaatcagtgcgacctctgcca
gtagggggcattgacgtcttccgcccctgtgaggagtgtggcgccgattcggagaactgg
gtctgcctctgctgctacaaggtgctgtgtgggcgctttgtaaaagagcacatggtgacc
cacggccaggtgtctggtcaccccatggttctcagctttgctgacctgtctgtctggtgc
tacccctgtgaatcttacgttcacaacaaggtgctgcacgaaatcaaaaatgctgctcac
gtggcgaagttcggagaggaaattccccccatcaactaa

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