Astyanax mexicanus (Mexican tetra): 103045413
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Entry
103045413 CDS
T05042
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103045413 (smchd1)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103045413 (smchd1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103045413 (smchd1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103045413 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Apidaecin
Motif
Other DBs
NCBI-GeneID:
103045413
NCBI-ProteinID:
XP_022533343
Ensembl:
ENSAMXG00000002900
LinkDB
All DBs
Position
16:23190464..23250746
Genome browser
AA seq
2054 aa
AA seq
DB search
MPERACRKRSGDAFLSQFRFGGAETDIRPETEAAETAGQRNMADLGAPRAEPEPDNRSVY
IYDCRPESRESSEREIEISGKDFTQFLQAVRKEFSITRKDAFVLTTTDRREINKDIYGEL
ANGKTLHLLQSVDQELTKATQERINYLPHYHTIVQSGQYEYYASEGQKALPYAFAELIDN
ALSATSRNPGVRRIDIRLLFDESQGGPAVVVMDNGRGMTSKELNNWAVYRLSKFNRENST
FQRCFFRSSPKETLNPEPLAQPGCEEYGDSVKENRSDHSGYVRPTPVPRSLNSDISYFGV
GGKQAVFYIGQSVRIISKPVGSPDVHEFVMSKEDFERKEKNKEEIYSGIIRNRKPGDCSH
VKVDEERFLQSLILEEEGKDSFTAIVINRIQPEHVTYLRNDFILWTRELAHIYHYYVHGI
HGNDLKNEKKADSPSNIDIQICLLERSPRLPKLINLREIDKDMQTLYINSSVAEFEFKAS
KGSDARVEGLIRYHPFLYDKETYPEDPYNSTPVAENDDDDCFIFQAEGRGKRPIFECFWN
GRLIPYSSVNEFEWCAKPKKMCTVPLECYNRISGVLFANDCFQVSTNKLTFMDLELQLRD
KETIFTRVLNSQEQRVKISREFTIWLKECHERFDKQVKFIGYHGTTTRTDVSSKRQQSPW
ARFKGIHWDGKVYKAGQQVKSVKTQPILFGSIVQFLLYGDHEGDVYATGGHVQIALEPQE
LYNEVRIIPISKIDRQATDSAIKKSIAEELAKLPDQLKVSWPEGNPWPDKAVRPAGTPLG
PIQVHILNKKGETMSRLPVSNINAKKLLMELKVIWHSPKGDVQTNSHICMHSTKWEFWFK
VMENLNKLGKYTLCLQTLLSDSESASEWAGKRLPQYVLHFTIKESSAACFVLRSVPTSVQ
VGVPFSLNLEFKDEFDHVTQPPSDIKPQLECSSLQLNYEQTALNGTTFTVQDLRAKGKVT
NQLEKVHTVKVIVPGLKQDFQSFQFSVRPGPPQQLVVFPENDISIENGSPAGFKVEVHDE
FQNITTHSKLIVRCQLLGAPDLPVDTVDCSNTGTGVLLAKPVQLKNVTTEQVLTAKFGIP
NQKGISCVERSLRVLPSTRVFRVEIYRQDSDDVMLIQNLERINWTAGDTLGSLRFRLYDE
GGRLVPLTHKLAHNVKVNWTAGVRTAELAKGRLPNVSVPTKVQREHFYQVSFTDQQSVET
SFFIIPRPDEPDKLRVTLRENTVKMGETLSENISVEVVDQYGNKTDTLNAENIKTVSVHA
DDLDVSTLSVDWQESSGTVLVSGVRFTGGSPGSRELCFKYQEFEEFARVKVTAGPPAKIT
LVEAPEMPLHVLNGRGLDTPFLLQLCDKWENPVPDQRVVIAIKTLSTQLKVKSSVMSRPV
DPDGKACFKLEMVTAPKGEHELEFRGSFSRNSIPGPVVKLNVMPDPNNPVKLTVEYDNEA
ILIAGDFLPEFKVMVVSEEGGPVKNVNPASLTMLLWQGLAAGTRPPPEATNFKCSQQDSD
IFYFRDKEIPEHVGKYIVQFVFVGEKGKFLWSSQIALKVVHDKPVRLVPESSPATPVVSN
SDAGNRTLLDSLCLKIMDKYNNPAGTGKNGQVVVTVIGAAGSKAKDLPLFEKKAKSVSYK
LTEGEATITGLALMENSPGCDGAEYTLQFQPVIEGPGPSPTITPFTLPFRFYNDAENQKV
MAEMSKKKDQLSHSIVLYKGILDTHTQLASELESQVRDASSRETQCKSELSKSGIDVSKL
RTVSAVDSLIAEKKADMEKIQNAPRRKCTMPDSFKGSPDVLGKIAHLAQVEDDDAAKVIS
WHILGDMDCVVTVTTAAAKKIYDDTQGRQQVMPLETVFWRPNTRPLPHIRNEEPLFKPLG
NPVFVRDLLIFPEHEENCNKVFSTVVGDTILVDDLDSANHYRKGVVQNKVQCPTLLTRQG
ERIRGNGKFGGLQNKAPPIEKLRGQVFGAPLPEEYHTISKQIELLQQYSVAVQKASEVRA
DFDGHMLYLKSPEMKQKQRELQDQEKTLKDIEKKLASTPVRSSPVSVAKRNLLEEPDETL
PAKRIRRKKRILDS
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcgagcatgtcggaagcggagcggtgacgcgtttctctctcagtttcgcttt
ggtggagcggagacagatatcagacctgagacagaggcagcagaaacagcagggcagagg
aacatggcggacctgggggctccccgagctgagcccgagcctgacaaccgctcggtttac
atctacgactgtcgcccggagagcagagagtcctctgagagggagatagagatcagcggt
aaagactttactcaattccttcaggctgtccgcaaggagttttctatcactcgaaaagat
gcttttgtactcactaccacagatcgcagggagatcaataaagacatttatggagaactt
gcaaatggcaaaacattacaccttctacagtctgtggatcaagagctgaccaaggcaact
caagagcgaattaattatcttccacattaccacaccatcgtgcagagtggacagtatgag
tactatgcaagtgaaggacagaaagcactaccctacgcttttgctgagctcattgataat
gcactttccgccacttcacgtaatcctggagtcaggaggattgacatcagactgttgttt
gatgagtctcaaggtggtccagctgtagtggtgatggataatggtcgtgggatgacctct
aaagagttaaacaactgggctgtttatcgcctttctaaattcaatcgagaaaacagcact
tttcagaggtgcttcttcaggtcaagtccaaaggaaactttgaatcctgagcctctggca
caaccaggatgtgaggagtatggtgatagcgtgaaagagaacaggagtgatcattctgga
tatgtgcgtcccactccagtaccacgcagtctcaacagcgacatctcctactttggcgtc
ggaggcaaacaggccgtgttttatatcggccagtctgtacggatcatcagtaagccggtc
ggctctccagacgtacacgagtttgtcatgtctaaagaagactttgagcggaaagagaaa
aacaaagaggagatttattcagggattatccgcaaccggaagcctggggactgttctcat
gtgaaagtagatgaagagcggtttttgcagtctctcattctggaggaggaaggcaaggac
agcttcaccgcaatagtcataaacagaatccagccagaacatgttacctacctcagaaat
gacttcatcttgtggacaagagagttggcgcacatctatcattactacgttcatggtatc
catggaaatgacttaaaaaatgagaagaaggcagattctccatcaaacatcgacatacag
atctgtctgctcgagcgttcccctcggttaccaaaactgatcaatctgagggaaatcgat
aaagacatgcagactctttatataaactccagtgtggcagagtttgagtttaaagccagt
aaagggagcgacgccagagtagagggactgatcagatatcatccattcctgtatgacaaa
gaaacctacccagaggacccatacaactcaacaccagttgcagaaaatgacgacgatgac
tgttttatttttcaagctgagggacgaggaaaaagacccatttttgagtgcttctggaat
ggacgattaattccttattcttctgtcaatgagtttgagtggtgtgcaaaacccaagaaa
atgtgtacagtgcctttagaatgctacaacagaatctcaggtgttctcttcgctaacgac
tgttttcaagtcagcaccaataaactcacatttatggatctggaactgcagctacgagac
aaagaaaccatctttaccagagtccttaacagccaggagcagagagtgaagatcagtcga
gaattcacgatttggttaaaagaatgtcatgaacgatttgacaaacaggtgaagttcatt
ggttaccatggtacaacaactcgcacagatgtctcatctaagcggcagcagtcgccatgg
gctcggttcaaaggcatccattgggacggcaaagtctacaaggctggacagcaagtgaaa
tcagtgaaaactcaacctattctgtttggctccatagttcagtttctgctctatggagac
catgagggggacgtctacgccactgggggacatgttcagattgcactggaaccgcaggaa
ctgtataatgaggttcgaattattccaatatccaagatcgacagacaggcaacagattct
gccatcaagaaaagcattgctgaagaactggccaagcttcctgatcagttgaaggtttca
tggccagaaggaaacccgtggcctgacaaggctgttcgtccagctggcactcctttaggt
ccaatccaagtgcatattctgaataagaaaggagagacgatgtcccggctgccggtctcc
aacatcaacgccaaaaaactcctgatggagctgaaagtcatctggcactctcctaaaggg
gatgtccagacaaactctcacatttgcatgcactccaccaagtgggagttctggttcaaa
gtaatggaaaacttgaataaattgggaaagtacacactttgcttgcagactttgctgagt
gatagtgagtcagctagtgagtgggctgggaaacgtctgcctcagtatgtgcttcacttc
actattaaagaaagcagtgcagcatgctttgtattgcgctcagttcccacgtcagtgcag
gtgggcgtgcccttctctctgaacctggaatttaaggatgaatttgatcatgtgactcag
cccccatctgacatcaaaccccagctagagtgcagttcactgcagctaaattacgagcag
acagctttgaatggaactacatttaccgtacaagacctgagagccaaggggaaagtaaca
aaccagctggagaaggttcacacggtgaaagtcatcgtcccaggcctcaaacaggacttc
cagtctttccagtttagtgttcgtccaggtcctccacaacaactggtggtttttcctgag
aacgacatctctatagaaaacggatcaccagcaggatttaaagtggaggttcacgatgag
tttcagaacatcacaacacattccaaactcatcgtccgctgccagttattaggagcccct
gatttacctgtggatactgttgactgcagtaataccggcacaggggtgctgctcgcaaaa
ccagttcagctgaagaatgtcaccactgagcaagtcctcactgccaagtttggcattcct
aaccagaagggaatatcttgtgtggagcggagtctgcgcgtgctgcccagcacacgtgtc
ttccgtgtggagatttacaggcaggattcggatgatgtcatgttgattcagaatctggaa
cgaatcaactggacagcaggagacacactcgggagtctgcgcttcagactgtatgatgaa
ggaggcaggctggtgcctttaacacacaaacttgcacataatgtaaaggtgaactggact
gcaggcgtaaggacagcagaactggctaagggaagacttccaaatgtttctgttccaacg
aaagtacagagagagcacttctatcaggtgtcttttacggatcagcagtcagttgagacg
tcctttttcataatcccacgtccagatgaacctgacaaactgagggtcactctcagagag
aacactgtgaaaatgggagaaactctatcagaaaatatctccgttgaggtggttgatcag
tatggtaataagacagacactctgaatgctgagaacatcaagacagtcagtgttcacgca
gatgacctggatgtgtccaccctcagtgtcgattggcaggaaagctcaggcactgtgttg
gtgagtggtgtgcgcttcactggaggctcaccgggttccagggagttgtgcttcaagtac
caagaatttgaggagtttgccagagtaaaggtcactgctggaccccctgctaaaatcacg
ctggtggaagctccagaaatgccgttacatgtgttaaacggacgaggtctggacactccg
ttcctgctacagttatgtgacaagtgggaaaaccctgttccagatcagcgagttgtcata
gcgatcaaaacgctttcaacacagctcaaggttaaatcatcagtgatgtcccggccggtg
gatccagacggaaaggcttgcttcaaattggagatggtgacggcaccaaaaggagagcat
gagctggagttccgcggatccttcagtagaaacagtattcctggtccggtggtgaagctg
aacgtgatgcctgatcccaacaaccccgtcaaacttactgtggaatatgataatgaggcc
atcttaatagcaggagactttttgccagagtttaaagtgatggtggtctctgaagaaggt
ggtccggtgaagaatgtgaatccagccagtctgaccatgctgctgtggcagggtttagcc
gcaggaacccgccctcctcctgaggcaacaaattttaagtgcagtcaacaggattcggac
atcttttacttcagagacaaggagattccagaacatgtaggaaaatacattgtgcagttt
gtcttcgttggagaaaaaggcaagttcctctggagcagtcagattgctctgaaggtagtt
catgataagccagtgaggcttgttccagagtcttctcctgcaacccccgtggtctctaac
agcgatgctggtaatcgcacacttctggacagtttatgtctgaagattatggacaagtac
aacaaccctgctggtacggggaaaaacgggcaggtggttgtaacagtgatcggtgctgca
ggaagtaaagcaaaagatcttcctctgtttgagaagaaggccaaaagtgtatcctacaaa
ctcacagaaggagaagccaccatcactggcttggcactgatggagaacagtcctggatgt
gatggagctgagtacacactgcagttccagccggtgatcgagggacctggacccagtcct
accatcactccgtttacattacctttcaggttctacaatgatgcagagaaccagaaagtc
atggctgagatgagtaaaaagaaagatcagctctctcactctattgttctgtacaaaggc
atattagacacccacacgcagctggcttctgaactagaaagtcaggtgcgcgatgcatca
agcagagagactcagtgcaaatcagaactgagcaaaagtggtatagatgtttccaaattg
cgaactgtgtcagcagttgacagtttgattgctgaaaagaaagcagatatggagaagata
cagaatgcacctcgccgaaaatgcaccatgcctgattcatttaaaggcagtccagatgtg
ctgggaaagatagcacacctggcacaggtggaggatgatgatgcagcaaaggtcatctcc
tggcatattcttggtgacatggactgtgtggttacagtaacaacagctgcagcaaagaaa
atctatgatgacacgcaaggacgacaacaagtcatgcccttagagacagttttctggaga
ccaaataccaggcctctgcctcacatcaggaatgaagaacctttatttaagccgttagga
aaccctgtgtttgtccgagatctgctcatttttcctgagcatgaagagaactgcaacaag
gttttttcaactgttgttggagacacaatattggtggatgatctggactctgctaatcat
taccgtaagggggtggtgcagaataaggtgcagtgtcccacgctgctgacgcgtcagggt
gagcggattcgtggtaatggaaagtttgggggtctgcagaataaagctcctccaatagag
aagttgagaggacaggtgtttggagcacctctgcctgaagaatatcacaccatatccaaa
cagatagagctgctgcagcagtactctgtggcggtacagaaagcgtcagaggtccgagct
gattttgacggtcacatgctttacctgaagagtccggagatgaagcagaaacagcgggag
cttcaggatcaggagaagactctaaaggacatcgagaagaaactagccagcactcctgta
cgcagttctcctgtttcagtagccaaacgaaacctcctagaggagcctgatgagaccctt
cctgctaaaaggattcgccgtaaaaaaagaatcctggattcttag
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integrated database retrieval system
