Astyanax mexicanus (Mexican tetra): 103047126
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Entry
103047126 CDS
T05042
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
3.6.4.13
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04622
RIG-I-like receptor signaling pathway
amex04623
Cytosolic DNA-sensing pathway
amex05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103047126 (ddx58)
04623 Cytosolic DNA-sensing pathway
103047126 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
103047126 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
amex04054
]
103047126 (ddx58)
Pattern recognition receptors [BR:
amex04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
103047126 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
CARD
SNF2-rel_dom
GTP_cyclohydroI
ERCC3_RAD25_C
PhoH
AAA_22
AAA_19
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
103047126
NCBI-ProteinID:
XP_022517872
Ensembl:
ENSAMXG00000015795
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MYELEKQNLRLFSKYIVQVLRPSYIKVFLSEYLDEESVERILSEEKASVTSAAQMLLDKM
FQLEAEGWFQAFLDTLLASEYTGLHAAVSDWNFAELEDLQDCRTLLDRVEPSITKNMKPR
ELLSHLSDCLTHREREEIRAVEDQCGCVAASERLVKSLRRCDKQWFKMLKTALYNCSQKL
ALQLLEPDESEEMCVSEECEENMDTMSTVRFEFTEDGESNEGLLKSINEISSSDQPSEGA
VITAGMGRSAEKKLREYQKELAEAAFSGQNTIICAPTGCGKTIVALAICEHHLKKFPGKA
KVVFMATKVEVYAQQYKLFIDHFSKDPDVRVTGVCGDTDVGVCLRSVVDRNEVVVLTPQI
LVNALQNKDLPSLDVFTLLLLDECHNTTGKHPYNNIMSRYLDTKLTSSAHTLPQVVGFTA
SVGVGSFKNQQEAEMNICHLCANLDTRVIATVTKNIDELRSYVHIPEKEFFEVPASPISD
PFIRIIRNIMCNIEQLAKKIYDIDSLSPILNRDYGSQKYEQWIVDVQKRCKLLRLTDPEQ
ERRVCRALFNYTEHLRKYNDALIINEDARTKDALDYLQAFIEQVRKAGYDSTERTLTAFF
DVQREQLLRLATEGQENPKLQELKFILEEEYRNNDQTRTVLFVRTRALADALKKWIDDTD
SLKFLNPGVLIGRGRKSSQMVGSGMTLTSQKGVLDSFKTSDHIKILIATSVADEGIDIPQ
CNLVLMYEYVGNVVKMVQVRGRGRAAGSRCFLISNRNERIEKEKQNMEREKIVEKAIVSL
QASPETLQAKVKLFQREDKASRDFESRSPEKPRTVGSYKLLCAKCNAFACVSDDLRVLKE
CHHIILNHTVFKRCVTNPHLNPRSFDGITKTQKMLCAECKLDWGIIASYLNIKDLPIVKI
ESFVVQDVATQRKHYFRKWRDVTFAMREFELTEITPETWGPRE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggagaaacagaacctgcggctctttagtaaatatatcgtccaggtttta
cgaccgtcttacatcaaagtgttcctgagcgagtacctggatgaagagtctgtggagcga
atcctctctgaggagaaggcgtcggtgacgtctgcagctcagatgctgctggacaagatg
tttcagctggaggcagagggctggttccaagcctttctggacacgctgctggcctcggag
tacacaggtctgcatgccgcagtcagtgattggaattttgctgagctggaagacctgcag
gattgtaggacgctgctggaccgcgttgagccgtccatcaccaaaaacatgaagccccga
gagctgctctcccacctgagcgactgcctcacacacagagagcgtgaggagatcagagcg
gtggaggatcagtgtggatgtgtggcagcgagtgagcgactggtgaagagtctgagacgc
tgtgataaacagtggttcaaaatgctgaagactgctctctataactgcagccagaaactc
gctctacagctgctggagcctgatgagagtgaggagatgtgtgtgtcagaagagtgtgag
gagaacatggacaccatgtcgaccgtgcgttttgagtttacagaggatggagagagtaat
gaaggcctgctgaagagcattaacgagatcagttcctctgaccagcccagtgaaggagca
gttatcacagctggcatggggaggtcagcggaaaagaagctgagagaatatcagaaagaa
ctggccgaggccgccttcagcggacagaacaccatcatctgcgctccaactggttgtgga
aagactatcgttgccttggcaatctgtgaacatcacctcaaaaagtttcctggaaaggcg
aaggtggtgtttatggcaaccaaggtggaagtttacgcacagcagtacaaactctttata
gatcacttcagcaaagaccctgatgtcagagtgactggtgtgtgtggggatacagacgta
ggggtgtgtctgcgctctgtggtggaccgtaacgaggtggtagtgctgacccctcagatc
ctggtgaacgctctgcagaataaagacctgccgtctctggatgtcttcactctgctgctg
ctggacgagtgtcacaataccacgggaaaacacccctacaacaacatcatgagccgctac
ctggataccaaactcaccagcagcgcacacacactgccacaggtggtgggttttacagca
tcagtaggtgtcggaagttttaagaaccagcaggaggcagagatgaacatttgccacctg
tgtgccaacctggacaccagggttatcgccaccgttaccaagaacatagatgagctcaga
tcgtatgtacacatacctgagaaagaattttttgaggtacctgcatcccccatctcggac
cccttcatcaggatcatcagaaacatcatgtgtaacattgaacagctggccaagaagatc
tatgacatagattctctctcacccattctgaatcgtgattatggcagtcagaagtatgag
cagtggattgtggacgttcagaagcgctgtaagctactgcggctgactgaccctgagcag
gagagaagagtctgcagggctttattcaactacactgagcacctgcgaaaatataacgac
gctctgatcattaacgaggacgctcggaccaaagacgctctggattatctgcaggccttc
atcgagcaggtccgcaaggccggctacgacagcacagagagaacgctcactgcattcttc
gatgttcagagggagcagttgctgcgtttggccacagaggggcaggagaaccctaaacta
caggagctgaagttcatcctggaggaagaatatcgtaataacgatcaaacccgcaccgtg
ctgtttgtccggacaagagccctcgctgatgctctgaaaaagtggatagatgacacggat
tctctcaagtttttaaatcctggagttttgattggacgaggaagaaaatcttcccagatg
gtgggctcagggatgacgctgaccagtcagaagggcgttctggactcctttaaaacttct
gaccacattaagatcctaatcgccacctccgttgctgacgagggcatcgatatcccacag
tgcaacctggtgctcatgtatgagtacgtgggcaatgtggtgaagatggtgcaagttcga
ggtcgtggcagggctgcgggcagtagatgttttctgatctccaacaggaatgagcgtatt
gaaaaggagaagcagaacatggagagagagaaaatagtagagaaagccatcgtcagcctg
caggcatcacctgagacactccaggccaaggtgaaattgtttcagagggaagacaaggcc
agtagagattttgagagccgaagtccagagaagcctcggacagtgggcagttataagctg
ctgtgtgcaaagtgtaacgcgtttgcatgtgtcagtgatgatctacgagtgctgaaggag
tgccaccacattatcctcaatcacactgtatttaagcgctgtgtcactaaccctcacctc
aaccccaggagctttgatggaatcactaaaacacagaagatgctctgcgctgagtgtaaa
ctggattggggcatcattgcttcatatctcaacataaaggatctgccgattgtgaaaatt
gagagtttcgtggttcaggacgtcgccacacagagaaaacattacttcaggaagtggcgt
gacgtgacatttgccatgcgagaattcgagctgacagagataactccagaaacgtggggg
ccgagagaatag
DBGET
integrated database retrieval system
