KEGG   Astyanax mexicanus (Mexican tetra): 103047681Help
Entry
103047681         CDS       T05042                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03410  Base excision repair
Module
amex_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    103047681 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amex03400]
    103047681 (lig3)
Enzymes [BR:amex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103047681 (lig3)
DNA repair and recombination proteins [BR:amex03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     103047681 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 103047681
NCBI-ProteinID: XP_007245342
Ensembl: ENSAMXG00000007489
UniProt: W5KJD4
LinkDB All DBs
Position
3
AA seq 1011 aa AA seqDB search
MHSLCLCKTIKALSGAPLSALCRRVPLRQSLRRQPLSQCAQTLIPIWSFASKACGSLTLS
TPSRQFSLSSSAPFGGSWPVWQGDGPDMAEQRFCVEYAKRGTAGCKKCKDKIMKGLVRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKH
VSDLAAKANATPKKKVQSKLNTSGQLSTPLADPTVNAPRKFSGFTATKAGSSSSDPGPSP
SKPTQGSTLSAQFCDPDHKDCLFREFRKLCAMVADKSSYNAKTEIIKNFLRKGSGGDKFK
GDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRILNCNQEEMVRDLEQGDVSETVRMFFDA
STSFPAATKSLLTIQEVDASLSRLAQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDL
KINSGAKHVLDALDPNAYDAFKASRNLGDVVDRVLRNQQEASNGTGPRKLLSVEATLMTP
VQPMLAEACKSIEHAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKEFIPQAFAGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYF
NGVSLMDKPLCERRKFLHDNMIEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLK
DIKGLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGGFFGSGSKGGIMSSFLMGCYDPDS
KKWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFLIRDPQKAP
VWEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLPQLKELYRISKENCDFEV
TAGPSTSSKDDKGSSGGDSGSSSPSVSHGAPSTNKPKNGHTPKPVKSEPPSPAKRKLPAE
EQRAKKIKTEAVHSNGKNKPNAALAKTPNPQTEKTLLDIFTGVKLYLPETVPDFEKLRRY
FVAYDGELVPSYDAASATHTVAEPEEHSQAQKVTSNWIWECIRKRRVVPPC
NT seq 3036 nt NT seq  +upstreamnt  +downstreamnt
atgcatagtctttgcctttgcaagacaataaaagccctcagtggtgcacctttgtcagca
ctgtgtaggagggttcctctgcggcaatcactaaggagacagcctctatctcagtgcgct
cagactctgattccaatctggagttttgcttctaaagcgtgtggcagtttgactctttcc
actccatccagacagttcagtctctcgtcttcagcaccttttggtggatcttggcctgtg
tggcagggtgacgggcctgacatggcggagcagcggttctgtgtagaatatgccaaacgt
ggcactgcaggctgcaagaaatgcaaggacaaaatcatgaagggtctggtccgcatcggc
aagattgtgcccaacccgttcagcgagtctgccggagaaatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgagctcgggccaccaccaagaagattgaagacatc
actgatctggaaggctgggaggagcttcaggatgaggataaagagctaattaataagcat
gtttcagatttagctgctaaagcaaatgcaactccaaaaaagaaggttcaatccaaacta
aacaccagcgggcagttatcaacacctcttgctgatccaacagtcaatgcaccacgcaag
ttttctggtttcacagccacaaaggcaggttcgtcctcctcagacccaggcccctctccc
agtaaacccactcagggcagcaccctgtctgcacagttctgtgatccggaccacaaggac
tgccttttccgtgaattccgcaagctctgtgccatggtggctgataagtccagctacaac
gcaaagaccgagatcatcaagaacttcttaaggaagggttctggtggagataagtttaaa
ggtgacctctacctgacggtgaagctgcttcttccgggagtggtgaagagtgtttacaat
ctcaacgacaagcaaatagtcaagctcttcagtcgcatcttaaattgcaatcaagaagag
atggtgcgcgatctggaacagggggatgtttctgagactgtgaggatgttttttgatgcc
agcacatcgtttcctgcagcaaccaagagtctcttgaccatccaggaagtggatgcctcg
ctaagtcgcctggctcagctgaccaaagaagatgaccagcaggcagagctccaggacatt
gctaagaaatgtactggaaatgacttgaaatgttacattcgacttgtcaaacacgatctg
aagattaattctggggctaaacatgttctggatgctttggaccccaatgcttatgatgcc
ttcaaagcctcccgaaaccttggcgatgtggtcgacagggttctgcggaaccagcaggag
gcatctaacgggaccggaccgaggaagctgctgagtgtggaggctacacttatgacccct
gttcaacccatgttggcagaagcatgtaaatccattgagcatgctatgaagaagtgccct
aatggaatgtactccgagatcaagtacgatggtgagcgtgtgcaggtgcacaagaacgga
gatcactttagctactttagccgcagtctcaaacccgtgctgcctcacaaggtggcacat
tttaaagagtttatacctcaggcttttgctggtggccacagcatgattctcgatgctgaa
gtcctcttgattgacaccaagaccagcaaacctctgccttttggaacattaggagttcac
aaaaaagcagccttccaagatgcacaagtcggcctctttgtgtttgactgtatttacttt
aatggagtcagtcttatggacaagccgctttgtgagagaagaaaatttctccacgacaac
atgattgaagttcctaacaggattctgttttcagaaatgaaacatgtcacaagagctgct
gatctggctgaaatgatcacacgggtcatcagagagggacttgaaggcctggttcttaaa
gacattaaggggctgtatgaacctggaaaacgtcactggttgaaggtgaagaaagactac
ctcaatgaaggagccatggctgacactgcagacctggtggttttagggggattttttggt
tcaggctccaaaggtggaataatgtccagttttcttatggggtgctatgacccagactcg
aagaagtggtgcactgtgactaaatgctcaggaggatatgatgacgccactctagctaga
ctacagaaggagttggacgtaattaaaattggcaaggatcccagcaagattcctggctgg
ttaaaaattgtcaagaactactacccagattttctcatccgggatccacagaaagcacca
gtgtgggagatcacaggagcggagttctctaagtcagagatgcacacggccgacggcatc
tctattcgtttccctcgctgcactcgcatgcgtgatgacaaggactggaagacggccacc
aatcttccacagctcaaggagctgtaccgtatctcaaaagagaattgtgattttgaggtg
accgcaggaccttccacaagcagtaaagatgacaaagggtcctcaggaggagacagtgga
agcagctctccttctgtgtcccatggagcaccgagcacaaataaacccaaaaatggtcac
actccaaagccagtaaaatcggaacctccatctcctgcaaagagaaagctgcctgctgag
gaacagcgtgcaaagaagatcaagactgaagcagttcacagcaacggaaagaataaacca
aatgctgctttagcaaagacccctaatccacagactgagaagactttgctagacatcttc
actggtgtaaagctctacctcccagaaacggtgccggactttgagaagctgcggcgctac
tttgtggcgtacgacggagaactggtgccttcgtatgatgcagcctctgctactcataca
gtagctgaaccagaggagcacagccaggcccagaaagtcacctccaactggatctgggag
tgtatccgcaaaaggagagtggttccgccttgctga

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