Actinosynnema mirum: Amir_6153
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Entry
Amir_6153 CDS
T00957
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ami
Actinosynnema mirum
Pathway
ami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amir_6153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ami03021
]
Amir_6153
03019 Messenger RNA biogenesis [BR:
ami03019
]
Amir_6153
Transcription machinery [BR:
ami03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Amir_6153
Messenger RNA biogenesis [BR:
ami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Amir_6153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ACU39960
UniProt:
C6WHL1
LinkDB
All DBs
Position
complement(7205355..7207484)
Genome browser
AA seq
709 aa
AA seq
DB search
MSNTDVLSSDSAAPNAAASSGAEENALSTPTNGGAPARKRAGLSGMVLAELRELAGQLGI
DSTAKLRKGDLIAAIKERQGGTSGRGSAATPPKAEKPKAEKATAKPAEAPAPAAEKAVEK
PTQQQLDVPERAGEEETGRRGNRRRRSANRPAGSPEAPVAAAAPAAPAQVEAPQQAEQRP
ERVERAERSDRGDRGERSERQGRERGERSDRGDRSDRGERAERSDRGERSDRGERSDRGE
RSDRGERSDRGERGDRSERGERGDRNRDRDRDRGERGDRNRDRDRQSNNVPEDDGDDEGG
RRGRRFRDRRRRGGRGEGAGVGTDTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPND
VYVSLSLVRKHGLRRGDAIIGAVRQPRDGEQQRQKFNPLVRVDKINGLDPEESRNRPDFT
KLTPLYPNERLRLETEPHILTTRVIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITT
NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMG
HDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIA
TALVETGSAGDSVIFEEFKGTGNAELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDEL
AVMHKLRRVLHALDGQQAIDLLLDRLRKTRTNIEFLMQVAKTTPGADND
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatgtgctgagcagcgattccgctgctcccaacgccgctgccagttcc
ggagccgaggagaacgctctgtccacccctacgaacggcggcgccccggcgcgcaagcgc
gcgggactctccggcatggtgctggccgaactgcgtgaactcgcaggtcagctcggcatc
gacagcacggccaagctccgcaagggcgacctcatcgcggccatcaaggagcggcagggc
ggcacctccggtcggggcagtgccgcgacgccgccgaaggccgagaagccgaaggccgag
aaggccaccgcgaagcccgccgaggcgcctgcccccgccgccgagaaggcggtcgagaag
ccgacccagcagcagctcgacgtccccgagcgcgcgggggaggaggagaccgggcgtcgc
ggcaaccgccgtcgccggtccgccaaccgccccgcgggcagccccgaggcgcccgtcgcc
gctgctgcccccgccgctcccgcgcaggtcgaggccccgcagcaggcggagcagcggccc
gagcgcgtcgagcgtgccgagcgctccgaccggggtgaccggggcgagcgctccgagcgc
cagggccgggagcggggcgagcgctccgaccggggtgaccgctccgaccgcggcgagcgc
gctgagcgttccgaccgcggtgagcgttccgaccgcggtgagcgttcggaccgcggtgag
cgttcggaccgcggtgagcgttcggaccgtggtgagcgcggcgaccgctccgagcggggc
gagcgcggcgaccggaaccgcgaccgtgaccgcgaccgcggcgagcggggcgaccgcaac
cgcgaccgcgaccgccagagcaacaacgtgcccgaggacgacggcgacgacgagggcggc
cgtcgcggtcgccgcttccgggaccgccgccgccgtggcggccggggcgagggcgcaggc
gtgggcaccgacaccgaggtgcgcgacgacgacgtcctgctgcccgtcgcgggcatcctg
gacgtgctggagaactacgccttcgtgcgcacctccggctacctcgcgggcccgaacgac
gtctacgtgtcgctctcgctggtgcgcaagcacggcctgcggcgcggtgacgccatcatc
ggcgccgtccgccagccgcgcgacggcgagcagcagcggcagaagttcaacccgctggtg
cgcgtcgacaagatcaacgggttggacccggaggagtcgcgcaaccgccccgacttcacc
aagctgaccccgctctacccgaacgagcgactgcgcctcgagaccgagccgcacatcctc
accacgcgcgtcatcgacctggtgatgccgatcggcaagggccagcgcgccctcgtcgtg
tcgccgcccaaggcgggcaagacctcggtgctccagtcgatcgccaacgcgatcacgacg
aacaaccccgagtgccacctgatggtggtcctcgtggacgagcgccccgaagaggtcacc
gacatgcagcggtcggtgaagggcgaggtcatcgcctccaccttcgaccgcccgccgtcg
gaccacaccacgatctcggagctggccatcgagcgggccaagcgcctggtcgagatgggt
cacgacgtggtcgtgctgctcgactccatcacccgcctcggccgcgcctacaacctggcg
gccccggcgtccgggcgaatcctgtccggtggtgtcgactcgacggcgctgtacccgccg
aagcgcttcctcggcgccgcccgcaacatcgagggcggcggctcgctgaccgtgatcgcc
accgcgctggtggagaccgggtcggccggtgacagcgtgatcttcgaggagttcaagggc
accggcaacgccgagctcaagctcgaccgcaagatcgccgacaagcggaccttcccggcg
gtggacgtggactcgtccggcacccgcaaggaggacctgctgctgtccccggacgagctg
gcggtcatgcacaagctgcgccgggtgctgcacgcgctcgacggccagcaggcgatcgac
ctgctgctcgaccggctgcgcaagacgcgcaccaacatcgagttcctgatgcaggtcgcg
aagaccacgccgggcgcggacaacgactga
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