Advenella mimigardefordensis: MIM_c24040
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Entry
MIM_c24040 CDS
T03016
Name
(GenBank) putative ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIM_c24040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amim03019
]
MIM_c24040
03009 Ribosome biogenesis [BR:
amim03009
]
MIM_c24040
Enzymes [BR:
amim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MIM_c24040
Messenger RNA biogenesis [BR:
amim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MIM_c24040
Ribosome biogenesis [BR:
amim03009
]
Prokaryotic type
rRNA processing factors
MIM_c24040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHG64478
UniProt:
W0PHP7
LinkDB
All DBs
Position
2740225..2743449
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDIDIETAGREQRKGSIYKGVITRIEPGLEACFVNY
GHDRHGFLPFKEVVRSYFKEGVDVRNARIQDALYEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRDAMEQLDLPSGMSIIARTAGIGRSVPELQ
WDLKYLLQLWTAIDAAAKDYPAPVLIYQESSLVIRAIRDYFSPDIAEILIDTEAITQQAT
AFMQDVMPDNVNRVKRYQDDIPLFSRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAI
DVNSARSTRGADIEETAMRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDNKNQRAVEQK
LRDALHVDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDVESSALN
VLRLLQEEAMKENTAALHAQVPVEVATFLMNEKRADIVKLESRLRVNLVLIPNKHFETPH
HHIERIRYDDSRLDDPKTSIDLIEAPETTVTWESTKEKSEHNERPEALVKGISPDQPAPS
AIKPQVAAQPQVSAAAPSLGGMFQKILSWLAGPKVATPAEPQKDESATEKTGTRNARSGS
RNAASGERGERGGRNRRGDKRTSAKSDEDGENRRNPRGRQRKQDDSDNQDSVADSKTPAS
AQAQANTATEDGGGRSRNRRGRGRNRRNSGDEAEVTAATAVTTDNTEQVQTAASAQAETA
PAPRRSRQASTETAARPTPLEQDLIDDDSEEENDRTTEGEDTQTGEAEPRRRRRRSRRGR
RQNDSVETADTEKASFVPNEVLLATGSGVAAQATEAAAEAADNVAVTTPAQSNSVSDNTA
TPAQTDLSTKAPAAAAAEEAPATAAPAADHPAAALAEQAPVVSESVAETTAVETASVETT
PVETAKPVEAATPAESVETATPAVSAETDAAPIAAAGNVAATRTPAESAEKTVAQADAPV
EQAEPQPVTVAEEAAASAEETAAGAQEPTTAVAAPASAPTPAPAPAPVVAEPVAANKEVL
KEIVSGVGMEWVETRPGLTEEALMAPPPKPAGRPRKARAQVQAEPLEIVETSKE
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaacgcaacgcatcaagaagaattacgcgttgcgattgtcgac
ggccagaaactgatcgacatcgatatcgaaaccgccggccgtgaacaacgcaagggaagc
atctacaaaggggtcattacacgtattgaacccgggctggaagcctgctttgtcaactac
ggtcacgaccgtcacggttttcttcctttcaaggaagtagtccgcagctatttcaaggaa
ggcgtggacgtgcgcaatgcacgtatccaggacgccctgtacgaaggccaggaactcatc
atccaggtggaaaaagaagaacgcggcaataagggcgcagccctgaccaccttcatttcc
ctggccggccgctatctggtcctgatgcccaacaacccccgtggtggtggcgtctcgcgc
cgcatcgaaggtgaagatcgtcaggaactgcgcgatgccatggagcagcttgacctgcct
tcaggcatgagcattattgcccgcaccgccggtatcggccgcagcgttcccgaactgcag
tgggatttgaagtacctgctgcaactgtggaccgcaatcgatgccgccgccaaagactat
ccggcacccgttcttatttatcaggaatccagcctggtgattcgcgccatccgtgattat
ttctcaccggatatcgccgaaatcctgatcgacaccgaagccattacccaacaggcaacg
gccttcatgcaggacgtgatgcctgacaacgtcaatcgcgttaaacgctatcaggacgat
attccgctgttttcgcgcttccagattgaacatcagattgaaaccgcgtattcacgtacc
gtccagttaccctctggtggctctgtcgttattgaccacacagaagccctggtcgccatt
gatgtgaactcggcccgctcgacgcgcggcgccgatatcgaagaaaccgccatgcgcacc
aacctggaagccgccgaagaagtggcccgccagctacgcctgcgtgacctgggtggtctg
atcgtgatcgacttcatcgacatggaggacaacaagaaccagcgcgccgtcgaacaaaaa
ctgcgcgatgctctgcacgtggatcgtgcccgggttcagatgggaaaaatttcccgtttc
ggcctgatggaactgtcgcgtcagcgcctgcgtccggccctgaacgaaggctcacacatt
acctgcccgcgctgtaacggcaccggcgttatccgtgacgttgaatccagcgccctgaat
gtgctgcgcctgctgcaggaagaagccatgaaggaaaataccgctgccctgcacgctcag
gtgccagtggaagtggccaccttcctgatgaatgaaaaacgggccgatatcgtcaaactc
gaatcccgactgagagtcaatctggtcttgattccgaacaagcatttcgagacgccacat
catcacatcgaacgcattcgctacgatgattcccgcctggatgacccgaaaaccagcatc
gatttgatcgaagcaccggaaaccaccgttacctgggaatccaccaaggaaaaatccgaa
cataacgaacgtcccgaagcactggtcaaaggcatttctccggatcagccggcacctagc
gcgattaaaccgcaagtcgccgcgcagcctcaggtgagtgccgccgcccccagcctcggt
ggcatgttccagaaaattctgtcctggctggccggcccgaaagtagccacaccggcagaa
ccgcaaaaagacgaatctgcgactgaaaaaaccggcacacgcaatgcacgtagcggttcc
cgcaacgctgccagcggtgaacggggcgagcgcggtggccgcaatcgccgtggcgacaaa
cgcacatcggcaaaatccgacgaagacggcgaaaaccgtcgtaatccgcgcggacgccag
cgcaagcaggacgacagtgacaaccaggacagcgttgccgacagcaaaacgcccgccagc
gcccaggcgcaggcaaacaccgccacggaagacggtggtggtcgcagtcgtaaccgccga
ggacgcggccgtaaccgccgtaacagcggggatgaggccgaagtcacagcagcaaccgct
gtaacaacagacaataccgaacaggtacagaccgcagcatccgcccaggccgaaactgct
ccggcacctcgccgtagccgtcaggccagcacggaaacagctgctcgtccgacgcctctg
gaacaggatctgattgacgacgattccgaagaggaaaacgatcgtacaacagaaggcgaa
gatacccagactggtgaagctgaaccgcgtcgccgccgtcgtcgcagccgccgtggccgt
cgtcagaacgattcggtagaaacagcagataccgaaaaagcatctttcgtgcccaatgaa
gtgctgctcgccacaggctcaggcgtcgctgcacaggctaccgaagcagcagccgaagca
gcagacaacgtggcagtcacaacgccagcgcaaagcaattcggtatctgacaataccgcc
acgcctgcgcaaaccgatctgtcaactaaagcacccgcagccgctgccgccgaggaagca
cccgcgaccgcagcgcccgccgctgatcatccggcagccgccctggcggaacaagcgcct
gttgtgtccgagtctgttgcagaaacaacagctgttgaaacggcatcggttgaaacaacc
cctgttgaaactgcaaagccggttgaagcagcaacacctgcggaatcggtagaaacggca
acacccgcggtttccgctgagaccgatgcagctccgatagcagcagctggcaacgtcgct
gccaccaggacgcctgccgaatcagcagaaaaaacggtcgctcaggctgatgcccctgtc
gaacaggcagagccacagccggtaaccgtagccgaagaagcagccgcgagcgcagaagag
acagccgccggtgctcaagagcctacaactgcagttgcagcgcccgcatccgctcctaca
ccggctcctgccccggcgcccgtcgttgctgaaccggtggccgccaacaaggaagtgctc
aaggaaatcgtttccggcgttggtatggagtgggtagaaacacgcccaggcctgaccgaa
gaagcgctgatggcacctcctcccaaaccggcaggacgacctcgcaaggcgcgtgcccag
gttcaggcggaaccgctggaaatcgtggaaacgagtaaagagtaa
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