Alligator mississippiensis (American alligator): 102561456
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Entry
102561456 CDS
T03087
Symbol
FAM188B
Name
(RefSeq) family with sequence similarity 188 member B
KO
K22647
ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:
3.4.19.12
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amj04121
]
102561456 (FAM188B)
Enzymes [BR:
amj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
102561456 (FAM188B)
Ubiquitin system [BR:
amj04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
MINDY
102561456 (FAM188B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MINDY-3_4_CD
TIMP
Motif
Other DBs
NCBI-GeneID:
102561456
NCBI-ProteinID:
XP_014464453
LinkDB
All DBs
Position
Un
AA seq
784 aa
AA seq
DB search
MFDQVQITPVLFGIKMDNCFVEEVAASVVREFLSRKGLKKTMATMDQEFPRSALSINNRN
ELRNVLHIQSLYKENKAKENPLKTILEMMTNYFLEHFGSMSSIISNSVASLPPNKPSLVS
TADYSEDDMCGNTIRSDAFKTEAYRCEIDDLLDKVIPSRRHHQTSEKSNTGISPNSSSFS
EGDKKFKNSMEDLKIIRNSEEMKTTMKEKQRSRSSLILRGMMAGPTASSQEDSLKRRPLK
QRFSSISSTLQFKGEHSHSSNLPNGDFQESKVTSVQSIGNLCPHNDTAMKADVELSSKTS
SGSYRSSAMEEIRNIPEDTDDPFAKLLSERERSRVGERKSMPSFDTEPGEKTLKLNMFHR
HSGSGREKRERSLKKNESQLPGPRKAPTSISNKGDLVKDALELVDVEDEAAVGEVRKIPD
HSTLCMLQVDSKAMDISLAKEIKNLLFGSSLCCFSEEWKIQSFTFNNIPQLKYGIVQKKG
GPCGVLAAVQACVLQELIFGDSGRNSEARCLQPSEAHRTKCLTVAIADILWRAGENEKAV
IALPSGRQQFTPVGKYKADGVLETLMLHTITKYEDLTIFLQKNIHQFETGPCGCILLTLS
VILSRSIHLVRSDFDVATNRLIGIHGYCTQELVNLLVTGKAVSNVFNNVIELDSGNGNIT
ILKGISGRSDIGLLSLFEHYDVCQVGCYLKTPKYPIWLVCSESHFSVLFCLQKDLLGDWR
TERLFDLYYYDGLANQEEEIRLTVDTTQNYTEDKENDLIPPLEHCIRTKWKGAVIDWNGA
EPIL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatcaagtacagatcacccctgtgcttttcgggataaaaatggataactgcttt
gtggaggaggtcgctgcatctgtggtgagagaatttctcagtagaaagggtttaaaaaag
actatggccaccatggaccaggaatttccacgctctgctcttagcatcaacaacaggaat
gaactcagaaatgttctccatatacagtctctgtacaaagaaaacaaggccaaggagaac
ccactgaaaacaattctagaaatgatgacaaactatttccttgaacattttggaagcatg
agtagcatcatttcaaattctgtggcatcacttcctccgaataaaccctccttagtcagt
acagcagactactccgaagacgacatgtgtgggaatacaataagatccgatgcatttaaa
actgaagcctacagatgtgagattgatgacctgcttgataaagtcattccatccaggaga
catcatcagacaagtgagaaatccaacactgggataagtccaaatagtagctcattctct
gaaggggataaaaagtttaaaaacagcatggaggatttaaaaataataagaaattctgag
gagatgaagaccacaatgaaagagaagcaaaggtctaggtccagtcttatcctcagagga
atgatggctggaccaacagcgagttcacaagaggattcgctaaaaaggaggcctctgaag
caacgattttctagcatcagtagcacactgcagttcaaaggggaacacagtcattcttcg
aatctgccaaatggcgattttcaggagagcaaagtgacttctgtacagtccataggtaac
ctctgtccgcacaacgacactgccatgaaagcagacgtggagctttcatccaagacttcg
tcaggctcgtacaggagttcagccatggaggaaatcagaaatatccctgaagacacagac
gacccctttgccaagctgctgtcggaaagagagagaagccgagttggagagaggaaatcg
atgccgagctttgatacagagccgggtgaaaaaaccctcaaattaaatatgtttcacagg
cattctggatctggaagggagaaaagagaaaggtccctcaaaaagaatgagagtcagtta
ccaggccccagaaaggctccaacatccatttccaataaaggcgacctggtgaaagatgcc
ttagaactagttgatgtcgaggatgaagcagcagttggggaagttaggaagatcccagac
cattcgacactctgtatgcttcaagtagattcaaaggcaatggatatttcccttgcaaaa
gaaataaaaaatcttttgtttggctcaagcctttgttgcttcagtgaagaatggaaaata
cagagttttacatttaataatatacctcagttgaaatacggcattgtgcaaaaaaagggc
ggcccgtgtggagtactggctgccgttcaagcctgtgtcctacaagagcttatctttgga
gacagcggcaggaatagcgaagctcggtgtctccagccttcagaagcgcataggaccaaa
tgcctcactgtggcaatagcagatattttatggcgagcaggggaaaacgaaaaagcagtg
attgcactgccttcaggaaggcagcagttcactccagtaggaaaatacaaagcagatgga
gtcttagaaacgctaatgctacataccatcacaaaatatgaggatctgacaatatttctt
cagaagaatattcatcagtttgaaactggtccgtgtggatgcattcttctcactctgtca
gttatcttatcaagatctattcatctggtgcgcagtgactttgatgtggccacaaaccga
ttgataggtatccacggatactgcacacaggaacttgtgaacttgcttgtgactggcaaa
gctgtgtccaatgtgttcaacaatgtgatagagctggactctggaaatggcaacatcacc
atattaaaaggcatcagtggacgcagtgatatcggcttgctgtctctctttgagcactat
gatgtttgccaggttggctgctacttgaagacccctaagtatccgatttggttggtgtgc
agtgaaagccacttcagcgtgctgttttgcttgcaaaaggacttactgggtgactggaga
acagaacggctgttcgatctatattactatgatggcttggccaatcaagaagaagaaata
cggctaacggttgatacaactcagaattatactgaagataaagaaaatgatcttattcct
ccccttgagcactgtattaggacaaagtggaagggagccgttatcgactggaacggcgct
gagcccatcttatga
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integrated database retrieval system
