Alligator mississippiensis (American alligator): 102563239
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Entry
102563239 CDS
T03087
Symbol
IRF1, IRF1B
Name
(RefSeq) interferon regulatory factor 1
KO
K09444
interferon regulatory factor 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
102563239 (IRF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102563239 (IRF1)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
102563239 (IRF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF
MukF_M
ESM4
Motif
Other DBs
NCBI-GeneID:
102563239
NCBI-ProteinID:
XP_006261200
LinkDB
All DBs
Position
Un
AA seq
318 aa
AA seq
DB search
MPVTRMRMRPWLEMQINSNQIPGLTWINKDKMMFQIPWKHAAKHGWDMEKDACLFRSWAV
HTGRYKIGEKEPDPKTWKANFRCAMNSLPDIEEVKDKSINKGSSAVRVYRMLPPLTKLQK
KERKSKSSRDSRNKSRRKSYEDMRSDEAVEALNSTMIPDDHSSYTVQDYAGQEVKVESTS
VTLDLSPCDIHAAVTEWRTPMEIALADSTNDIYQLQVSPLASSSEVTDEDQEEIKSDLFK
LLEQDWHTTSIGGKGYLTNEPGTQSLCSYMYKEQDAEIDTTSEEIELRLCTDMKSSSLEF
SWLETVRSSNMQAIPCNF
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgacaagaatgcgcatgaggccttggttggaaatgcagatcaattccaatcaa
ataccaggactgacctggatcaataaggataagatgatgttccagatcccatggaaacat
gcagctaagcatggctgggacatggaaaaagatgcctgccttttccgaagttgggccgtt
cacactgggagatacaagataggggagaaagaaccggaccctaaaacatggaaggcaaat
ttccgctgtgccatgaattcattgcctgatatcgaagaagtgaaggataaaagcatcaat
aaaggctccagtgcagtccgggtttaccgaatgttaccacctttaacaaagctacagaaa
aaagaaaggaagtcaaaatcatctagagactcaagaaacaagagcagaagaaagtcatat
gaggacatgaggtcagatgaagcagtagaagcactaaacagcacaatgataccagatgac
cacagcagttacacagttcaggactatgcaggacaggaagtgaaggttgaaagcacatct
gtcaccctcgatctctcaccatgtgatatacacgctgcagtgaccgaatggagaacccca
atggaaatagcactggctgacagcacaaatgacatctaccagcttcaagtgtcacctcta
gcttcatcttctgaagtgacagatgaagatcaagaggaaataaagtcagacctttttaag
ctgcttgaacaagactggcatacaaccagcattggcgggaaaggctatcttaccaatgag
cctggcacacaaagcctgtgcagttacatgtacaaggagcaggatgctgaaattgatacc
acctcagaagaaatcgagctgagactttgcactgatatgaaaagcagcagtctagagttc
tcttggctggagacagtaagatcttcgaatatgcaagccattccttgcaacttctaa
DBGET
integrated database retrieval system
