KEGG   Alligator mississippiensis (American alligator): 102566879Help
Entry
102566879         CDS       T03087                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03030  DNA replication
amj03410  Base excision repair
amj03420  Nucleotide excision repair
amj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102566879 (LIG1)
   03410 Base excision repair
    102566879 (LIG1)
   03420 Nucleotide excision repair
    102566879 (LIG1)
   03430 Mismatch repair
    102566879 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amj03032]
    102566879 (LIG1)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102566879 (LIG1)
Enzymes [BR:amj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102566879 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     102566879 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     102566879 (LIG1)
DNA replication proteins [BR:amj03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    102566879 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     102566879 (LIG1)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     102566879 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     102566879 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     102566879 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 102566879
NCBI-ProteinID: XP_014458576
UniProt: A0A151PH33
LinkDB All DBs
Position
Un
AA seq 954 aa AA seqDB search
MQRSIMSFFQPVKGAKAEESRPLEDEHATKKMPEKVEKQSNGLGHCANSPVKPIGKRSLR
RIIESDSEEEEPEPAVIAEEGQMQVETPKKASSKQELVHPAQSELSADSPSPSSSQSAKN
SSDGTDTTHSDIPRRRTARKQMPRSKIEMATSRENGHPKEPVAKRLREEPDPRDETGERA
KVAAESMEMQEVKGQSSEEELTKGKGTSGEAAGNKDKIDKTGGEAAAQKKSEPSKPSRAI
SNFFAPRKAPLAKTETGEASAATTMDESSVLKGSAAASGKQGNQMNTSSSEAAVLLDPVE
YNPSKSSYHPVQDACWGPGQRVPYLAVARTFETIEEVSARLKNIETLSNLFRSVIALSPS
DLLLCIYLCLNRLGPAYEGLELGIGESILMKAVAQATGRQLDKIKAEAQEKGDLGLVAES
SRSNQRTMFTPPKLSAIGVFNKFQEIARMTGSASMNKKIDIIKGLFVACRHSEARYVARS
LSGKLRIGLAEQSVLSAIAHAVSLTPPGQSCPPEVLDASQGKSADVRKTWLEEQAQILKQ
IFCELPNYDIIVPVLLEHGMESLPQYCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTC
EYKYDGERAQIHILENGDVYIYSRNQENNTSKYPDIVSRIPKVKKDSVQSCILDTEAVAW
DPEKKQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDMLYLNGESLVKQPFSRRRQLLHEL
FVETEGEFLFATSMDTCNTDEISEFLDQSIKDSCEGLMVKTLDVDATYEIAKRSHKWLKL
KKDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFSEETL
EKHYSFLKDLVLEKPRAYYRWDSSAEPDHWLDAVQVWEVKCADLSISPVHKAAIGLVDEE
KGISLRFPRFVRVRDDKKAEEATTSTQVAELYKKQQQIQNQQVAGRGEGEDDFY
NT seq 2865 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgctccattatgtcatttttccagcctgtgaagggagcaaaggcagaggagagc
agacctctagaagatgagcatgcgactaaaaagatgccagagaaggttgagaagcagagc
aatggtcttggtcactgtgcaaactccccagtgaagcctataggcaagaggtccttgcgc
cgaatcattgagagtgacagtgaagaggaggagcctgagccagcagtcatagcggaggag
gggcagatgcaggttgagactcctaagaaagccagcagcaagcaggagctggtgcaccct
gctcagtctgagctctctgcagacagcccgtcaccaagcagcagccagtctgctaaaaac
agttctgatgggactgacaccacccactctgacatccccaggcgcaggactgctcgcaag
cagatgcccagaagcaaaatagagatggcgacaagcagagagaatggccaccccaaagaa
ccagttgccaaaagattgagagaagagccagacccaagagatgagactggtgagagagca
aaggttgcagcagagtctatggagatgcaagaggtgaaagggcagagttcagaggaagag
ttaaccaagggtaagggcacctcaggggaagcagctggtaacaaggacaaaattgacaaa
actggaggagaagcagcagcccagaagaaatctgagccttccaagcccagcagagccatc
tccaacttctttgcccccaggaaggcaccattggcaaagacagagacaggagaagctagt
gcagccaccacaatggatgagtcttctgtcctgaagggctctgctgcagcaagtggcaag
cagggcaaccagatgaataccagttcttctgaggctgctgtgctgctggatcctgtggag
tacaatccttcgaagagcagctaccaccctgtccaggatgcctgctggggtcctgggcag
agggtcccctacctggcggtagctcgtacctttgagacaattgaggaggtgtctgcccga
ctgaagaacattgagactctgagcaacctcttccgatcggtcatcgccttgtccccatct
gacctgctgctctgcatctacctctgcctgaaccgcttgggcccagcctatgaggggcta
gagctgggcattggcgagagcatccttatgaaagctgttgcacaagctacaggtcgacag
ttggataagatcaaggctgaggcccaggagaagggtgacctgggtctggtggcagagagc
agccgcagcaaccaacgcactatgttcacaccacccaagctgagcgccattggggtcttt
aacaagttccaggaaatcgctaggatgacaggcagtgcttctatgaacaagaagattgac
atcatcaaggggttgtttgttgcctgtcggcactcagaagcccgctacgtagctagatca
ctgagcgggaagctccggatcgggttggcagagcagtcagtgttgtcagccattgctcat
gctgtgtctctcactcccccaggacaaagctgccctccagaggtgctggatgcaagccag
ggcaagtctgcagacgtacgcaaaacctggctggaggagcaggcccagattctcaaacag
atcttctgtgagctgccaaactatgacatcattgttcctgtcctgttagagcatggaatg
gagagcctgccacagtactgcaagatcaccccagggatcccactgaagcccatgctggcc
cagcccaccaagggcataggggaggtactgaagcgcttcgaggaggctgccttcacttgc
gagtacaagtatgatggggagcgagcccagatccacatactagagaatggggatgtgtac
atctacagccgcaaccaagagaataatacctccaagtaccctgatattgtcagcaggatc
cccaaggtgaagaaagacagtgtgcagtcatgtatcctggacacagaggctgtggcctgg
gaccctgagaagaagcagatccagccgttccaggtgttgactacccggaagcggaaagat
gtggaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacatgctgtacctc
aatggagagtccctggtgaagcagcccttctccaggcgccggcagctgctgcatgagttg
tttgtggagacagagggggagttcctgtttgccacttccatggacacatgcaatacagat
gagatctcggagttccttgaccagtccatcaaagactcctgtgaggggctcatggtcaag
accctggacgtggatgccacatatgagattgccaagagatcccataaatggctgaagttg
aagaaggattacttggagggtgttggagacacactggacttggtggtgattggtgcctac
ttagggaaaggcaagcgtgtgggcatgtatggaggcttcctgctggcctgctatgatgag
gagagtgaggagtaccagagcatctgcaagataggaactggcttcagtgaagagaccctg
gagaagcattacagttttctcaaggaccttgtactggagaagccaagagcttattaccgc
tgggacagcagtgcagagcctgaccactggctagatgcagtgcaggtgtgggaggtgaag
tgtgccgacctgtccatctcgcctgtgcataaggcagctattggcctggtagatgaggag
aaaggtatctccttgcgctttccccgctttgtgcgtgttcgtgatgacaagaaggctgag
gaagccaccaccagcacccaggtagctgaactctacaagaagcagcagcagattcaaaac
cagcaggtggcagggaggggtgagggagaagacgacttctattaa

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