KEGG   Alligator mississippiensis (American alligator): 102572799Help
Entry
102572799         CDS       T03087                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03410  Base excision repair
Module
amj_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:amj00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    102572799 (LIG3)
Enzymes [BR:amj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102572799 (LIG3)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     102572799 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 102572799
NCBI-ProteinID: XP_006270164
LinkDB All DBs
Position
Un
AA seq 906 aa AA seqDB search
MAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNPFTESGGDMKEWYHVKCIFEKL
ERARATTKKIEDITDLEGWEELQDAEKDLINQLISEATSKSASTPKKKATVQAKLSPSGQ
ITSPKKDPGAVPNPSPKKFSGFTAKPGSSGDTPANSSHKSTLSSKKCDPKHKDCLLREFR
KLCAMVADKPSYNVKTQIIQDFLQKGTGGDGFHGDLYLTIKLLLPGVIKIIYNLNDKQIV
KLFSRIFNCSQDEMVRDLEQGDVSETVRIFFEESRSCPPAAKSLLTIQEVDEFLIGLSKL
TKEDDQQTLLQGITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNL
QDVVERVLRNQQEAEKQPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEI
KYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPRAFPGGHSMILDSEVLLIDNK
TGKPLPFGTLGVHKKAAFQDANVCLFVFDCVYFNDVSLMDRPLCERRKFLHDNMVEIPXP
DPLLRDEACHKSFRSGRYDQRVIREGLEGLVLKDIKSTYEPGKRHWLKVKKDYLNEGAMA
DTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKTEKWCTVTKCSGGHDDATLARLQNELDM
VKISKDPNKIPSWLKINKLYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRC
TRIRDDKDWKTATNLPQLKELYQLSKEKSDFSVVAGEEEVSTAGSSGENNGNSGSSTPHN
TPKTPPRKSPAKTKKSEGNNLVYMTPKKKVEDKRGEKRKAAELDDNGKKILLDIFTGVRL
YLPPSVENFSKIRRYFVAYDGDLVQEFDTASATHVIGDLEENPGAKRVSPSWIWECIRKR
RLVAPC
NT seq 2721 nt NT seq  +upstreamnt  +downstreamnt
atggcggagcagcggtactgcgtggactacgccaagcgcggcacggccggttgcaagaag
tgcaaggagaagatcctgaagggcatggtccgcattgggaaggttgtgcccaaccccttc
accgagtcgggcggcgacatgaaggagtggtaccacgtgaagtgcatattcgagaagctg
gagcgggctcgtgccaccaccaagaagatagaggacatcacagacctcgaggggtgggag
gagctgcaagatgccgagaaagacctcatcaaccagcttatctcggaggccacatccaag
tctgcaagcacacctaagaagaaggcaacagtccaggctaagctgtcccccagtgggcag
ataacctcccccaagaaagatccaggagctgttcctaatccatctccaaagaaattctct
ggtttcacagctaaaccaggcagttctggggacacccctgccaattcttcccacaagtct
actctgtcttcaaagaagtgtgacccaaagcacaaggattgcttgttgcgggaattcaga
aaattgtgcgccatggttgctgacaagcccagctataatgtgaaaacacagatcatccag
gactttctgcagaaagggactggaggagatggctttcatggtgacttgtacctgaccatt
aagctgctgttgccgggtgtcattaaaattatttacaacttgaatgacaagcagattgta
aagctgttcagcagaattttcaactgcagccaggatgaaatggtccgggacctggagcag
ggagatgtttcagaaacagtccgcatcttttttgaggagagcaggtcctgtcctccagct
gccaaaagtctcctcacaatccaagaagtggatgagttcctaatcggactgtcaaagctt
acaaaggaggatgaccagcaaactctgcttcagggtatcactcgcaggtgcacgggcaat
gacctgaaatgcatcatcaggcttataaagcacgatttgaaaatgaatgctggtgcaaag
catgtgttagatgctttggatccaaatgcctatgaggcattcaaagcatcacgcaatctt
caggatgttgtggagcgtgtgctaagaaaccagcaggaggcagagaagcagccgggtctg
aagcgaaccctcagtgtgcaggcctctctgatgacccctgttcagcctatgctggctgaa
gcctgcaagtcaatagaatatgccatgaagaagtgtccgaatgggatgtacgcagagatc
aagtatgatggggagcgagtgcaggtccacaagaatggagatcatttcagctacttcagc
cgaagcctcaagccagtccttcctcacaaagtggcccattttaaggacttcatccccaga
gcttttcctggtggacacagtatgatcttggattcagaagttcttctcattgacaacaaa
acaggcaaaccactcccttttgggacccttggagtccacaagaaagctgctttccaagat
gccaatgtctgcttgtttgtatttgattgtgtttacttcaatgatgtcagcctgatggac
aggcctttgtgtgagcgtcgtaagtttctccatgataacatggttgaaatccccnagccg
gatcctcttctccgagatgaagcatgtcacaagagcttcagatctggcagatatgatcag
agagtcatccgtgagggactggaaggactggtgctgaaggatataaagagcacctatgaa
ccaggaaaacgtcactggctgaaagtgaaaaaggactatctaaatgaaggtgccatggct
gatacagcagacctggtggttctgggagctttctacggacaaggcagtaaaggtggaatg
atgtcaattttcctaatgggctgctatgatcccaagactgaaaaatggtgtacggtgaca
aagtgctctggtgggcatgatgatgccaccttagctcgcctgcagaatgagctggacatg
gtgaagatcagcaaggatcccaataaaattccaagctggctaaaaataaataagctctac
tatccagatttcattgttccagacccaaagaaggccccagtgtgggagataacaggtgcg
gagttctctaaagcagaagcccacacggcagatgggatttccattcgtttccctcgttgt
acccggatccgagatgacaaagactggaagacagccaccaatctccctcaactcaaggag
ctgtaccagctctccaaagagaagtctgatttcagtgttgttgctggagaggaagaagta
tctacagctggtagcagtggagagaataatggaaattcagggtcttccacaccacacaat
actcctaaaactcccccaaggaagtcgcctgcaaaaaccaagaagtctgaaggtaacaat
ttagtctatatgacccccaaaaagaaagtggaggataaacgaggggagaagcggaaagca
gccgagctggatgacaatgggaagaagatattgctggacatatttacaggggtgaggctg
tacctaccaccctccgtggagaacttcagcaaaatccggcggtactttgtggcatatgat
ggggaccttgtacaagagtttgatacggcttctgcaacgcatgtgataggggaccttgag
gagaaccctggagctaagcgtgtgtcacccagttggatctgggagtgtatccgcaagcgg
agactggtagccccctgctaa

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