Alligator mississippiensis (American alligator): 102573973
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Entry
102573973 CDS
T03087
Symbol
HMGB1
Name
(RefSeq) high mobility group box 1
KO
K10802
high mobility group protein B1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03410
Base excision repair
amj04140
Autophagy - animal
amj04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102573973 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102573973 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
102573973 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102573973 (HMGB1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102573973 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102573973 (HMGB1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
102573973 (HMGB1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
102573973 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
102573973 (HMGB1)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
102573973 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_box_5
Nop14
Motif
Other DBs
NCBI-GeneID:
102573973
NCBI-ProteinID:
XP_006268064
LinkDB
All DBs
Position
Un
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKVRYEREMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEYPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKTDTGKKVVAKAEK
SKKKKEEEEDEDEDEDEEEDEEEEEEEEEDDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggtgatcctaagaagccgaggggtaaaatgtcttcatatgccttctttgtg
caaacttgccgggaggagcacaagaagaagcatccagatgcttcggtgaacttttcagag
ttctcaaagaagtgttcagaacgatggaagactatgtctgctaaggagaaaggcaagttt
gaagatatggcaaaagctgacaaggttcgttatgaaagagagatgaaaaattatgtacca
cccaaaggggaaacaaaaaagaagttcaaggatccaaatgcacccaagaggcctccttcg
gcttttttcttgttttgctctgagtttcgtccaaaaatcaaaggtgaatatcctggtctg
tccattggagatgttgcaaaaaagctgggagagatgtggaacaacactgctgcagatgat
aaacagccttatgaaaagaaggctgctaaactgaaggagaagtatgaaaaggatattgct
gcataccgggccaaaggaaagactgatacaggcaaaaaggtagttgccaaggctgagaag
agcaagaaaaagaaggaggaggaggaagatgaagacgaggatgaagacgaagaggaggat
gaagaggaggaggaggaggaggaagaggatgatgatgatgatgaataa
DBGET
integrated database retrieval system
